clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF007M14 | Sequence | 360 | 005225 (4) | gb:AY622222_1618374 | 2e-27 | Ipomoea batatas protein disulfide isomerase mRNA, complete cds. | 791 | 011401 (2) | gb:AY622222_1618374 | 3e-86 | Ipomoea batatas protein disulfide isomerase mRNA, complete cds. |
JMSF011E12 | Sequence | 359 | 005225 (4) | gb:AY622222_1618374 | 9e-26 | Ipomoea batatas protein disulfide isomerase mRNA, complete cds. | 746 | 011401 (2) | gb:AY622222_1618374 | 3e-80 | Ipomoea batatas protein disulfide isomerase mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
rJMSF007M14+ AAGTCCAAATAC
____________________________________________________________
consensus AAGTCCAAATAC
. : . : . : . : . : . :
rJMSF011E12+ AGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAAG
rJMSF007M14+ GATGAAATTGCAGCGTTTTATAAGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAAG
____________________________________________________________
consensus GATGAAATTGCAGCGTTTTATAAGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAAG
. : . : . : . : . : . :
rJMSF011E12+ TCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTTA
rJMSF007M14+ TCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTTA
____________________________________________________________
consensus TCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTTA
. : . : . : . : . : . :
rJMSF011E12+ GGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACNTGATCAAATTGCA
rJMSF007M14+ GGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACCTGATCAAATTGCA
____________________________________________________________
consensus GGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACCTGATCAAATTGCA
. : . : . : . : . : . :
rJMSF011E12+ ACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCTATT
rJMSF007M14+ ACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCCATT
____________________________________________________________
consensus ACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCTATT
. : . : . : . : . : . :
rJMSF011E12+ CCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGTA
rJMSF007M14+ CCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGTA
____________________________________________________________
consensus CCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGTA
. : . : . : . : . : . :
rJMSF011E12+ TTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAAG
rJMSF007M14+ TTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAAG
____________________________________________________________
consensus TTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAAG
. : . : . : . : . : . :
rJMSF011E12+ CAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCATG
rJMSF007M14+ CAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCATG
____________________________________________________________
consensus CAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCATG
. : . : . : . : . : . :
rJMSF011E12+ ATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGGA
rJMSF007M14+ ATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGGA
____________________________________________________________
consensus ATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGGA
. : . : . : . : . : . :
rJMSF011E12+ TACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAGA
rJMSF007M14+ TACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAGA
____________________________________________________________
consensus TACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAGA
. : . : . : . : . : . :
rJMSF011E12+ ACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGGC
rJMSF007M14+ ACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGGC
____________________________________________________________
consensus ACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGGC
. : . : . : . : . : . :
rJMSF011E12+ TCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAGG
rJMSF007M14+ TCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAGG
____________________________________________________________
consensus TCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAGG
. : . : . : . : . : . :
rJMSF011E12+ CTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGTA
rJMSF007M14+ CTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGTA
____________________________________________________________
consensus CTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGTA
. : . : . : . : . : . :
rJMSF011E12+ GCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTAGGCTGTTAGCCC
rJMSF007M14+ GCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTA-GCTGTTAGCCCCTACCTCGTACC
____________________________________________________________
consensus GCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTAGGCTGTTAGCCCCTACCTCGTACC