Previous Contig 011401:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007M14Sequence360005225 (4)gb:AY622222_16183742e-27Ipomoea batatas protein disulfide isomerase mRNA, complete cds.791011401 (2)gb:AY622222_16183743e-86Ipomoea batatas protein disulfide isomerase mRNA, complete cds.
JMSF011E12Sequence359005225 (4)gb:AY622222_16183749e-26Ipomoea batatas protein disulfide isomerase mRNA, complete cds.746011401 (2)gb:AY622222_16183743e-80Ipomoea batatas protein disulfide isomerase mRNA, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007M14+ AAGTCCAAATAC
                      ____________________________________________________________
consensus AAGTCCAAATAC
 
. : . : . : . : . : . :
rJMSF011E12+ AGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAAG
rJMSF007M14+ GATGAAATTGCAGCGTTTTATAAGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAAG
                      ____________________________________________________________
consensus GATGAAATTGCAGCGTTTTATAAGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAAG
 
. : . : . : . : . : . :
rJMSF011E12+ TCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTTA
rJMSF007M14+ TCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTTA
                      ____________________________________________________________
consensus TCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTTA
 
. : . : . : . : . : . :
rJMSF011E12+ GGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACNTGATCAAATTGCA
rJMSF007M14+ GGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACCTGATCAAATTGCA
                      ____________________________________________________________
consensus GGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACCTGATCAAATTGCA
 
. : . : . : . : . : . :
rJMSF011E12+ ACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCTATT
rJMSF007M14+ ACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCCATT
                      ____________________________________________________________
consensus ACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCTATT
 
. : . : . : . : . : . :
rJMSF011E12+ CCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGTA
rJMSF007M14+ CCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGTA
                      ____________________________________________________________
consensus CCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGTA
 
. : . : . : . : . : . :
rJMSF011E12+ TTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAAG
rJMSF007M14+ TTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAAG
                      ____________________________________________________________
consensus TTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAAG
 
. : . : . : . : . : . :
rJMSF011E12+ CAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCATG
rJMSF007M14+ CAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCATG
                      ____________________________________________________________
consensus CAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCATG
 
. : . : . : . : . : . :
rJMSF011E12+ ATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGGA
rJMSF007M14+ ATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGGA
                      ____________________________________________________________
consensus ATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGGA
 
. : . : . : . : . : . :
rJMSF011E12+ TACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAGA
rJMSF007M14+ TACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAGA
                      ____________________________________________________________
consensus TACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAGA
 
. : . : . : . : . : . :
rJMSF011E12+ ACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGGC
rJMSF007M14+ ACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGGC
                      ____________________________________________________________
consensus ACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGGC
 
. : . : . : . : . : . :
rJMSF011E12+ TCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAGG
rJMSF007M14+ TCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAGG
                      ____________________________________________________________
consensus TCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAGG
 
. : . : . : . : . : . :
rJMSF011E12+ CTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGTA
rJMSF007M14+ CTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGTA
                      ____________________________________________________________
consensus CTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGTA
 
. : . : . : . : . : . :
rJMSF011E12+ GCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTAGGCTGTTAGCCC
rJMSF007M14+ GCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTA-GCTGTTAGCCCCTACCTCGTACC
                      ____________________________________________________________
consensus GCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTAGGCTGTTAGCCCCTACCTCGTACC