| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040N20 | Sequence | 288 | 007217 (6) | gb:AY099822_1576847 | 0.002 | Arabidopsis thaliana putative SF16 protein (At2g43680) mRNA, complete cds.>gb:BT | 489 | 011230 (6) | pir|T49310|T49310 | 2e-26 | hypothetical protein T16L24.240 - Arabidopsis thaliana>gb:ATT16L24_1554659 Arabi |
| JMSF002M08 | Sequence | 227 | 007217 (6) | 707 | 011230 (6) | pir|T49310|T49310 | 3e-28 | hypothetical protein T16L24.240 - Arabidopsis thaliana>gb:ATT16L24_1554659 Arabi | |||
| JMSF013J03 | Sequence | 248 | 007217 (6) | 745 | 011230 (6) | pir|T49310|T49310 | 1e-28 | hypothetical protein T16L24.240 - Arabidopsis thaliana>gb:ATT16L24_1554659 Arabi | |||
| JMSF017P04 | Sequence | 489 | 007217 (6) | gb:AY099822_1576847 | 4e-20 | Arabidopsis thaliana putative SF16 protein (At2g43680) mRNA, complete cds.>gb:BT | 745 | 011230 (6) | pir|T49310|T49310 | 1e-28 | hypothetical protein T16L24.240 - Arabidopsis thaliana>gb:ATT16L24_1554659 Arabi |
| JMSF038H06 | Sequence | 683 | 007217 (6) | gb:AY099822_1576847 | 2e-23 | Arabidopsis thaliana putative SF16 protein (At2g43680) mRNA, complete cds.>gb:BT | 886 | 011230 (6) | pir|T49310|T49310 | 1e-31 | hypothetical protein T16L24.240 - Arabidopsis thaliana>gb:ATT16L24_1554659 Arabi |
| JMSF050D11 | Sequence | 701 | 007217 (6) | gb:AY099822_1576847 | 3e-14 | Arabidopsis thaliana putative SF16 protein (At2g43680) mRNA, complete cds.>gb:BT | 727 | 011230 (6) | pir|T49310|T49310 | 9e-29 | hypothetical protein T16L24.240 - Arabidopsis thaliana>gb:ATT16L24_1554659 Arabi |
This contig is upended
. : . : . : . : . : . :
rJMSF038H06+ CCGATCCAGTGGGATACCCGTGGTGGTGGAACTGGTTAGAACGCCAG
____________________________________________________________
consensus CCGATCCAGTGGGATACCCGTGGTGGTGGAACTGGTTAGAACGCCAG
. : . : . : . : . : . :
rJMSF017P04+ TGCTGTG
rJMSF013J03+ TGCTGTG
rJMSF038H06+ CTGCCTCCTCCTGCAGCAGCAGCAGCAGCCGCCAATCCTTCAGAAAACCAGTCTGCTGTG
rJMSF050D11+ TGCTGTG
____________________________________________________________
consensus CTGCCTCCTCCTGCAGCAGCAGCAGCAGCCGCCAATCCTTCAGAAAACCAGTCTGCTGTG
. : . : . : . : . : . :
rJMSF017P04+ AAAAATGTCCACCTAACACCACCTAGGCCGGTATCAGACCGCAAACCACCTAGTCCTCGA
rJMSF013J03+ AAAAATGTCCACCTAACACCACCTAGGCCGGTATCAGACCGCAAACCACCTAGTCCTCGA
rJMSF038H06+ AAAAATGTCCACCTAACACCACCTAGGCCGGTATCAGACCGCAAACCACCTAGTCCTCGA
rJMSF050D11+ AAAAATGTCCACCTAACACCACCTAGGCCGGTATCAGACCGCAAACCACCTAGTCCTCGA
rJMSF002M08+ TAACACCACCTAGGCCGGTATCAGACCGCAAACCACCTAGTCCTCGA
____________________________________________________________
consensus AAAAATGTCCACCTAACACCACCTAGGCCGGTATCAGACCGCAAACCACCTAGTCCTCGA
. : . : . : . : . : . :
rJMSF017P04+ CTTCCAGCTACCAACTTCAAACCCCAAAACAGTGGATACGACAATCACGAAGCAGGCACA
rJMSF013J03+ CTTCCAGCTACCAACTTCAAACCCCAAAACAGTGGATACGACAATCACGAAGCAGGCACA
rJMSF038H06+ CTTCCAGCTACCAACTTCAAACCCCAAAACAGTGGATACGACAATCACGAAGCAGGCACA
rJMSF050D11+ CTTCCAGCTACCAACTTCAAACCCCAAAACAGTGGATACGACAATCACGAAGCAGGCACA
rJMSF002M08+ CTTCCAGCTACCAACTTCAAACCCCAAAACAGTGGATACGACAATCACGAAGCAGGCACA
____________________________________________________________
consensus CTTCCAGCTACCAACTTCAAACCCCAAAACAGTGGATACGACAATCACGAAGCAGGCACA
. : . : . : . : . : . :
rJMSF017P04+ CCAACATCCTCAAAATCTGCAGTTCCTGTGAGAGGCAAACAGTTCAGCACTCCTGGCAGA
rJMSF013J03+ CCAACATCCTCAAAATCTGCAGTTCCTGTGAGAGGCAAACAGTTCAGCACTCCTGGCAGA
rJMSF038H06+ CCAACATCCTCAAAATCTGCAGTTCCTGTGAGAGGCAAACAGTTCAGCACTCCTGGCAGA
rJMSF050D11+ CCAACATCCTCAAAATCTGCAGTTCCTGTGAGAGGCAAACAGTTCAGCACTCCTGGCAGA
rJMSF002M08+ CCAACATCCTCAAAATCTGCAGTTCCTGTGAGAGGCAAACAGTTCAGCACTCCTGGCAGA
____________________________________________________________
consensus CCAACATCCTCAAAATCTGCAGTTCCTGTGAGAGGCAAACAGTTCAGCACTCCTGGCAGA
. : . : . : . : . : . :
rJMSF017P04+ ACAACCCCGCCCAGCTCGAGTTTAGCCAAATTGATGCAACCTAGAGGCAGTGGCATTCGT
rJMSF013J03+ ACAACCCCGCCCAGCTCGAGTTTAGCCAAATTGATGCAACCTAGAGGCAGTGGCATTCGT
rJMSF038H06+ ACAACCCCGCCCAGCTCGAGTTTAGCCAAATTGATGCAACCTAGAGGCAGTGGCATTCGT
rJMSF050D11+ ACAACCCCGCCCAGCTCGAGTTTAGCCAAATTGATGCAACCTAGAGGCAGTGGCATTCGT
rJMFF040N20+ CCAGCTCGAGTTTAGCCAAATTGATGCAACCTAGAGGCAGTGGCATTNGT
rJMSF002M08+ ACAACCCCGCCCAGCTCGAGTTTAGCCAAATTGATGCAACCTAGAGGCAGTGGCATTCGT
____________________________________________________________
consensus ACAACCCCGCCCAGCTCGAGTTTAGCCAAATTGATGCAACCTAGAGGCAGTGGCATTCGT
. : . : . : . : . : . :
rJMSF017P04+ TCCCCTTTCGACTTCCCCTTGAAGGACGACGATAGCCTAACAAGCTGCCCTCCATTCTCG
rJMSF013J03+ TCCCCTTTCGACTTCCCCTTGAAGGACGACGATAGCCTAACAAGCTGCCCTCCATTCTCG
rJMSF038H06+ TCCCCTTTCGACTTCCCCTTGAAGGACGACGATAGCCTAACAAGCTGCCCTCCATTCTCG
rJMSF050D11+ TCCCCTTTCGACTTCCCCTTGAAGGACGACGATAGCCTAACAAGCTGCCCTCCATTCTCG
rJMFF040N20+ TCCCCTTTCGACTTCCCCTTGAAGGACGACGATAGCCTAACAAGCTGCCCTCCATTCTCG
rJMSF002M08+ TCCCCTTTCGACTTCCCCTTGAAGGACGACGATAGCCTAACAAGCTGCCCTCCATTCTCG
____________________________________________________________
consensus TCCCCTTTCGACTTCCCCTTGAAGGACGACGATAGCCTAACAAGCTGCCCTCCATTCTCG
. : . : . : . : . : . :
rJMSF017P04+ GTCCCAAGTTACATGGCGCCTACCGTCTCTGCCAAGGCCAAAGCAAGAGCAAGTAGCAAC
rJMSF013J03+ GTCCCAAGTTACATGGCGCCTACCGTCTCTGCCAAGGCCAAAGCAAGAGCAAGTAGCAAC
rJMSF038H06+ GTCCCAAGTTACATGGCGCCTACCGTCTCTGCCAAGGCCNAAGCAAGAGCAAGTAGCAAC
rJMSF050D11+ GTCCCAAGTTACATGGCGCCTACCGTCTCTGCCAAGGCCAAAGCAAGAGCAAGTAGCAAC
rJMFF040N20+ GTCCCAAGTTACATGGCGCCTACCGTCTCTGCCAAGGCCAAAGCAAGAGCAAGTAGCAAC
rJMSF002M08+ GTCCCAAGTTACATGGCGCCTACCGTCTCTGCCAAGGCCAAAGCAAGAGCAAGTAGCAAC
____________________________________________________________
consensus GTCCCAAGTTACATGGCGCCTACCGTCTCTGCCAAGGCCAAAGCAAGAGCAAGTAGCAAC
. : . : . : . : . : . :
rJMSF017P04+ CCGAGGGAGAGGAGTACAAGTAGTGCTGCAGGAACACCGACAAATGACTCAAAGCGGAGG
rJMSF013J03+ CCGAGGGAGAGAAGTACAAGTAGTGCTGCAGGAACACCGACAAATGACTCAAAGCGGAGG
rJMSF038H06+ CCGAGGGAGAGAAGTACAAGTAGTGCTGCAGGAACACCGACAAATGACTCAAAGCGGAGG
rJMSF050D11+ CCGAGGGAGAGAAGTACAAGTAGTGCTGCAGGAACACCGACAAATGACTCAAAGCGGAGG
rJMFF040N20+ CCGAGGGAGAGAAGTACAAGTAGTGCTGCAGGAACACCGACAAATGACTCAAAGCGGAGG
rJMSF002M08+ CCGAGGGAGAGAAGTACAAGTAGTGCTGCAGGAACACCGACAAATGACTCAAAGCGGAGG
____________________________________________________________
consensus CCGAGGGAGAGAAGTACAAGTAGTGCTGCAGGAACACCGACAAATGACTCAAAGCGGAGG
. : . : . : . : . : . :
rJMSF017P04+ TTTTCCTTTCCCTTGACCCCGAATATCGCATCTTTCAAGTGGAACAGAGGCTCCAGCAAA
rJMSF013J03+ TTTTCCTTTCCCTTGACCCCGAATATCGCATCTTTCAAGTGGAACAGAGGCTCCAGCAAA
rJMSF038H06+ TTTTCCTTTCCCTTGACCCCGAATATCGCATCTTTCAAGTGGAACAGAGGCTCCAGCAAA
rJMSF050D11+ TTTTCCTTTCCCTTGACCCCGAATATCGCATCTTTCAAGTGGAACAGAGGCTCCAGCAAA
rJMFF040N20+ TTTTCCTTTCCCTTGACCCCGAATATCGCATCTTTCAAGTGGAACAGAGGCTCCAGCAAA
rJMSF002M08+ TTTTCCTTTCCCTTGACCCCGAATATCGCATCTTTCAAGTGGAACAGAGGCTCCAGCAAA
____________________________________________________________
consensus TTTTCCTTTCCCTTGACCCCGAATATCGCATCTTTCAAGTGGAACAGAGGCTCCAGCAAA
. : . : . : . : . : . :
rJMSF017P04+ GATCCTACTACTCCTCAAAGGGAAACAGAGAAGCAAGGTGGAGATGGAGTGAGTGTGGAT
rJMSF013J03+ GATCCTACTACTCCTCAAAGGGAAACAGAGAAGCAAGGTGGAGATGGAGTGAGTGTGGAT
rJMSF038H06+ GATCCTACTACTCCTCAAAGGGAAACAGAGAAGCAAGGTGGAGATGGAGTGAGTGTGGAT
rJMSF050D11+ GATCCTACTACTCCTCAAAGGGAAACAGAGAAGCAAGGTGGAGATGGAGTGAGTGTGGAT
rJMFF040N20+ GATCCTACTACTCCTCAAAGGGAAACAGAGAAGCAAGGTGGAGATGGAGTGAGTGTGGAT
rJMSF002M08+ GATCCTACTACTCCTCAAAGGGAAACAGAGAAGCAAGGTGGAGATGGAGTGAGTGTGGAT
____________________________________________________________
consensus GATCCTACTACTCCTCAAAGGGAAACAGAGAAGCAAGGTGGAGATGGAGTGAGTGTGGAT
. : . : . : . : . : . :
rJMSF017P04+ TCAACTGTTTCTATGCCAGCTATAGTTGGGAGGAAACCATTTAACAGATTTGTGTGATTG
rJMSF013J03+ TCAACTGTTTCTATGCCAGCTATAGTTGGGAGGAAACCATTTAACAGATTTGTGTGATTG
rJMSF038H06+ TCAACTGTTTCTANGCCAGCTATAGTTGGGAGGAAACCATTTAACAGATTTGTGTGATTG
rJMSF050D11+ TCAACTGTTTCTATGCCAGCTATAGTTGGGAGGAAACCATTTAACAGATTTGTGTGATTG
rJMFF040N20+ TCAACTGTTTCTATGCCAGCTATAGTTGGGAGGAAACCATTTAACAGATTTGTGTGATTG
rJMSF002M08+ TCAACTGTTTCTATGCCAGCTATAGTTGGGAGGAAACCATTTAACAGATTTGTGTGATTG
____________________________________________________________
consensus TCAACTGTTTCTATGCCAGCTATAGTTGGGAGGAAACCATTTAACAGATTTGTGTGATTG
. : . : . : . : . : . :
rJMSF017P04+ GATTTCTT
rJMSF013J03+ GATTTCTT
rJMSF038H06+ GATTTCTT
rJMSF050D11+ GATTTCTTTTTCTTTTTCTTTTTTTGTTAACATCTGTATTAACCATTTTGAGGTTGCTTT
rJMFF040N20+ GATTTCTTTTTCTTTTTCTTTTTTTGTTAACATCTGTATTAACCATTTTGAGGTTGCTTT
rJMSF002M08+ GATTTCTTTTTCTTTTTCTTTTTTTGTTAACATCTGTATTAACCATTTTGAGGTTGCTTT
____________________________________________________________
consensus GATTTCTTTTTCTTTTTCTTTTTTTGTTAACATCTGTATTAACCATTTTGAGGTTGCTTT
. : . : . : . : . : . :
rJMSF050D11+ GTGTCTTTTCATGTATACCTACCTACCTACCTGAGTGTGTATTTATTTGGTGATATATGT
rJMFF040N20+ GTGTCTTTTCATGTATACC
rJMSF002M08+ GTGTCTTTTCATGTATACCTACCTACCTACCTGAGTGTGTATTTATTTGGTGATATATGT
____________________________________________________________
consensus GTGTCTTTTCATGTATACCTACCTACCTACCTGAGTGTGTATTTATTTGGTGATATATGT