Previous Contig 011161:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L06Sequence389004344 (4)696011161 (2)gb:BT010457_16404035e-32Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete
JMSF037C08Sequence644004344 (4)gb:BT010457_16404032e-33Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete 697011161 (2)gb:BT010457_16404031e-32Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF037C08+ CTTCTCAGCTGGTGAACTAGAAGGGATGGCATCTATGATTA
rJMSF001L06+ TCAGCTGGTGAACTAGAAGGGATGGCATCTATGATTA
                      ____________________________________________________________
consensus CTTCTCAGCTGGTGAACTAGAAGGGATGGCATCTATGATTA
 
. : . : . : . : . : . :
rJMSF037C08+ ACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTGG
rJMSF001L06+ ACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTGG
                      ____________________________________________________________
consensus ACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTGG
 
. : . : . : . : . : . :
rJMSF037C08+ AGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATCA
rJMSF001L06+ AGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATCA
                      ____________________________________________________________
consensus AGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATCA
 
. : . : . : . : . : . :
rJMSF037C08+ AAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTGT
rJMSF001L06+ AAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTGT
                      ____________________________________________________________
consensus AAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTGT
 
. : . : . : . : . : . :
rJMSF037C08+ CTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGTG
rJMSF001L06+ CTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGTG
                      ____________________________________________________________
consensus CTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGTG
 
. : . : . : . : . : . :
rJMSF037C08+ ACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGAT
rJMSF001L06+ ACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGAT
                      ____________________________________________________________
consensus ACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGAT
 
. : . : . : . : . : . :
rJMSF037C08+ TATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGCA
rJMSF001L06+ TATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGCA
                      ____________________________________________________________
consensus TATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGCA
 
. : . : . : . : . : . :
rJMSF037C08+ AGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTCA
rJMSF001L06+ AGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTCA
                      ____________________________________________________________
consensus AGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTCA
 
. : . : . : . : . : . :
rJMSF037C08+ AACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTTC
rJMSF001L06+ AACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTTC
                      ____________________________________________________________
consensus AACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTTC
 
. : . : . : . : . : . :
rJMSF037C08+ TCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGTA
rJMSF001L06+ TCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGTA
                      ____________________________________________________________
consensus TCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGTA
 
. : . : . : . : . : . :
rJMSF037C08+ ATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATATT
rJMSF001L06+ ATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATATT
                      ____________________________________________________________
consensus ATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATATT
 
. : . : . : . : . : . :
rJMSF037C08+ GGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATGTAAATCCAACT
rJMSF001L06+ GGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATG-AAATCCAACTCTTA
                      ____________________________________________________________
consensus GGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATGTAAATCCAACTCTTA