Previous Contig 011078:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C20Sequence564008115 (3)gb:AF424608_17989475e-37Arabidopsis thaliana At1g54990/F14C21_5 mRNA, complete cds.722011078 (4)gb:AF424608_17989472e-33Arabidopsis thaliana At1g54990/F14C21_5 mRNA, complete cds.
JMFF051F21Sequence556008115 (3)gb:AF424608_17989475e-37Arabidopsis thaliana At1g54990/F14C21_5 mRNA, complete cds.496011078 (4)gb:AF424608_17989470.014Arabidopsis thaliana At1g54990/F14C21_5 mRNA, complete cds.
JMFN038E14Sequence579011078 (4)gb:AF424608_17989472e-26Arabidopsis thaliana At1g54990/F14C21_5 mRNA, complete cds.
JMSF052I13Sequence613008115 (3)gb:AF424608_17989476e-37Arabidopsis thaliana At1g54990/F14C21_5 mRNA, complete cds.919011078 (4)gb:AF424608_17989472e-52Arabidopsis thaliana At1g54990/F14C21_5 mRNA, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052I13+ CTTAAGGAGTGTCACCATTCTTGATAGTGAACCAAGTGCACCCGCATTGCCCTTGTGGGC
                      ____________________________________________________________
consensus CTTAAGGAGTGTCACCATTCTTGATAGTGAACCAAGTGCACCCGCATTGCCCTTGTGGGC
 
. : . : . : . : . : . :
rJMSF052I13+ GTTCGGAGTGCCAGTAATCAGGGAGGCTGTTTTGCACTCTGGGTTCTTGTTCACGAGACT
                      ____________________________________________________________
consensus GTTCGGAGTGCCAGTAATCAGGGAGGCTGTTTTGCACTCTGGGTTCTTGTTCACGAGACT
 
. : . : . : . : . : . :
rJMSF052I13+ CCTCGAAAAGTATTGTTGTGAATCAGTGAGTAAGTCAGATGCCGAGGCACATAGGATTCT
                      ____________________________________________________________
consensus CCTCGAAAAGTATTGTTGTGAATCAGTGAGTAAGTCAGATGCCGAGGCACATAGGATTCT
 
. : . : . : . : . : . :
rJMSF052I13+ TTTGGCAGGAAGGGATGGCCGGAGAGCTATTGTTGGGATGGGGAAGAGGCTAAATTATAG
rJMFF031C20+ GGAAGAGGCTAAATTATAG
                      ____________________________________________________________
consensus TTTGGCAGGAAGGGATGGCCGGAGAGCTATTGTTGGGATGGGGAAGAGGCTAAATTATAG
 
. : . : . : . : . : . :
JMFN038E14- CAAGGCACTGCCAATGCAAGTGAT
rJMSF052I13+ CCTCGATTTGGCCGAATGGAGTGCTTCTGATGGGGTCAAGGCACTGCCAATGCAAGTGAT
rJMFF031C20+ CCTCGATTTGGCCGAATGGAGTGCTTCTGATGGGGTCAAGGCACTGCCAATGCAAGTGAT
                      ____________________________________________________________
consensus CCTCGATTTGGCCGAATGGAGTGCTTCTGATGGGGTCAAGGCACTGCCAATGCAAGTGAT
 
. : . : . : . : . : . :
JMFN038E14- TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
rJMSF052I13+ TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
rJMFF031C20+ TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
                      ____________________________________________________________
consensus TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
 
. : . : . : . : . : . :
JMFN038E14- TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
rJMSF052I13+ TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
rJMFF031C20+ TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
                      ____________________________________________________________
consensus TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
 
. : . : . : . : . : . :
JMFN038E14- AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
rJMSF052I13+ AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
rJMFF031C20+ AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
rJMFF051F21+ CCAAAACCATTAAACCGTC
                      ____________________________________________________________
consensus AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
 
. : . : . : . : . : . :
JMFN038E14- CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
rJMSF052I13+ CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
rJMFF031C20+ CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
rJMFF051F21+ CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
                      ____________________________________________________________
consensus CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
 
. : . : . : . : . : . :
JMFN038E14- TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCACGAGCACCACGATGGCCA
rJMSF052I13+ TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCACGAGCACCACGATGGCCA
rJMFF031C20+ TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCAC---CACCACGATGGCCA
rJMFF051F21+ TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCAC---CACCACGATGGCCA
                      ____________________________________________________________
consensus TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCACGAGCACCACGATGGCCA
 
. : . : . : . : . : . :
JMFN038E14- TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
rJMSF052I13+ TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
rJMFF031C20+ TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
rJMFF051F21+ TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
                      ____________________________________________________________
consensus TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
 
. : . : . : . : . : . :
JMFN038E14- ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
rJMSF052I13+ ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
rJMFF031C20+ ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
rJMFF051F21+ ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTTTGATTGTTCTTGGAAGCC
                      ____________________________________________________________
consensus ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
 
. : . : . : . : . : . :
JMFN038E14- AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
rJMSF052I13+ AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
rJMFF031C20+ AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
rJMFF051F21+ AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
                      ____________________________________________________________
consensus AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
 
. : . : . : . : . : . :
JMFN038E14- AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTT
rJMSF052I13+ AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
rJMFF031C20+ AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
rJMFF051F21+ AAGTGTAATTGCTTGAAAGTGAAGGTTTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
                      ____________________________________________________________
consensus AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
 
. : . : . : . : . : . :
rJMSF052I13+ GTTCTCAAGGCCACTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
rJMFF031C20+ GTTCTCAAGGCCACTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
rJMFF051F21+ GTTTTCAAGGCCCCTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
                      ____________________________________________________________
consensus GTTCTCAAGGCCACTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
 
. : . : . : . : . : . :
rJMSF052I13+ TGAACTATTCCTCATCTTT
rJMFF031C20+ TGAACTATTCCTCATCTTTTCATAACTAG-TTTTTGAAATGCAAGTC
rJMFF051F21+ TGAACTATTCCTCATCTTTTCATAACTAGTTTTTTGAAATGCAAGTCATCCCAAAATCCT
                      ____________________________________________________________
consensus TGAACTATTCCTCATCTTTTCATAACTAGTTTTTTGAAATGCAAGTCATCCCAAAATCCT