Previous Contig 011024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033B22Sequence436001482 (8)gb:AY248904_15926394e-05Nicotiana tabacum EIL2 mRNA, complete cds.683011024 (5)gb:AY248903_15926386e-19Nicotiana tabacum EIL1 mRNA, complete cds.
JMFF050M14Sequence550001482 (8)gb:AY248904_15926399e-13Nicotiana tabacum EIL2 mRNA, complete cds.590011024 (5)gb:AY248903_15926381e-10Nicotiana tabacum EIL1 mRNA, complete cds.
JMSF003B06Sequence261001482 (8)744011024 (5)gb:AB015855_15127301e-35Nicotiana tabacum mRNA for transcription factor TEIL, complete cds.
JMSF020I03Sequence650001482 (8)gb:AY248904_15926394e-37Nicotiana tabacum EIL2 mRNA, complete cds.759011024 (5)gb:AB015855_15127304e-37Nicotiana tabacum mRNA for transcription factor TEIL, complete cds.
JMSF028P15Sequence595001482 (8)gb:AY248904_15926393e-43Nicotiana tabacum EIL2 mRNA, complete cds.735011024 (5)gb:AB015855_15127301e-35Nicotiana tabacum mRNA for transcription factor TEIL, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020I03+ TCCTTCAATCTCTCGGGACTCGGTGTTCCAGAAGACGGGCAAAGGATGATCA
rJMSF028P15+ GGACTCGGTGTTCCAGAAGACGGGCAAAGGATGATCA
rJMSF003B06+ GGACTCGGTGTTCCAGAAGACGGGCAAAGGATGATCA
                      ____________________________________________________________
consensus TCCTTCAATCTCTCGGGACTCGGTGTTCCAGAAGACGGGCAAAGGATGATCA
 
. : . : . : . : . : . :
rJMSF020I03+ ACGATCTCATGTCGNTCTACGACACAAACATCCAGGGGAACAAAATCTCGAATCCTAGGA
rJMSF028P15+ ACGATCTCATGTCGTTCTACGACACAAACATCCAGGGGAACAAAATCTCGAATCCTAGGA
rJMSF003B06+ ACGATCTCATGTCGTTTTACGACACAAACATCCAGGGGAACAAAATCTCGAATCCTAGGA
rJMFF033B22+ AAAATCTCGAATCCTAGGA
                      ____________________________________________________________
consensus ACGATCTCATGTCGTTCTACGACACAAACATCCAGGGGAACAAAATCTCGAATCCTAGGA
 
. : . : . : . : . : . :
rJMSF020I03+ ACTCTGGACCTGCTAAAGAACAACCTCTTCAACAAACCAACA-TTCAGTGTCATCAGGGC
rJMSF028P15+ ACTCTGGACCTGCTAAAGAACAACCTCTTCAACAAACCAACA-TTCAGTGTCATCAGGGC
rJMSF003B06+ ACTCTGGACCTGCTAAAGAACAACCTCTTCAACAAACCAACA-TTCAGTGTCATCAGGGC
rJMFF033B22+ ACTCTGGACCTGCTAAAGAACAACCTCTTCAACAAACCAACATTTCAGTGTCATCAGGGC
                      ____________________________________________________________
consensus ACTCTGGACCTGCTAAAGAACAACCTCTTCAACAAACCAACA-TTCAGTGTCATCAGGGC
 
. : . : . : . : . : . :
rJMSF020I03+ GGTTTCCTTCAAAACCAAGGGATCATCCCGGGGAATATCTTCCAGGAGAGCAACATTTCC
rJMSF028P15+ GGTTTCCTTCAAAACCAAGGGATCATCCCGGGGAATATCTTCCAGGAGAGCAACGTTTCC
rJMSF003B06+ GGTTTCCTTCAAAACCAAGGGATCATCCCGGGGAATATCTTCCAGGAGAGCAACATTTCC
rJMFF033B22+ GGTTTCCTTCAAAACCAAGGGATCATCCCGGGGAATATCTTCCAGGAGAGCAACATTTCC
                      ____________________________________________________________
consensus GGTTTCCTTCAAAACCAAGGGATCATCCCGGGGAATATCTTCCAGGAGAGCAACATTTCC
 
. : . : . : . : . : . :
rJMSF020I03+ TCGACTCGTCCCATGTTCACATCGGGAGACCAGTTCGAGCAGCCCAAGGCTCTGAACTCC
rJMSF028P15+ TCGACTCGTCCCATGTTCACATCGGGAGACCAGTTCGAGCAGCCCAAGGCTCTGAACTCC
rJMSF003B06+ TCGACTCGTCCCATGTTCACATCGGGAGACCAGTTCGAGCAGCCCAAGGCTCTGAACTCC
rJMFF033B22+ TCGACTCGTCCCATGTTCACATCGGGAGACCAGTTCGAGCAGCCCAAGGCTCTGAACTCC
rJMFF050M14+ CCATGTTCACATCGGGAGACCAGTTCGAGCAGCCCAAGGCTCTGAACTCC
                      ____________________________________________________________
consensus TCGACTCGTCCCATGTTCACATCGGGAGACCAGTTCGAGCAGCCCAAGGCTCTGAACTCC
 
. : . : . : . : . : . :
rJMSF020I03+ CCTTTCAACGTCAGCTCCATCGAGACACTCCCCTTCATGTTTGGCCCTCCCTTCAACCTC
rJMSF028P15+ CCTTTCAACGTCAGCTCCATCGAGACACTCCCCTTCATGTTTGGCCCTCCCTTCAACCTC
rJMSF003B06+ CCTTTCAACGTCAGCTCCATCGAGACACTCCCCTTCATGTTTGGCCCTCCCTTCAACCTC
rJMFF033B22+ CCTTTCAACGTCAGCTCCATCGAGACACTCCCCTTCATGTTTGGCCCTCCCTTCAACCTC
rJMFF050M14+ CCTTTCAACGTCAGCTCCATCGAGACACTCCCCTTCATGTTTGGCCCTCCCTTCAACCTC
                      ____________________________________________________________
consensus CCTTTCAACGTCAGCTCCATCGAGACACTCCCCTTCATGTTTGGCCCTCCCTTCAACCTC
 
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rJMSF020I03+ CCACCCTCCGATTACTCTGAAGGCTTACTTGGCGTTCCACCCCTGCCAAAGAAAGACATC
rJMSF028P15+ CCACCCTCCGATTACTCTGAAGGCTTACTTGGCGTTCCACCCCTGCCAAAGAAAGACATC
rJMSF003B06+ CCACCCTCCGATTACTCTGAAGGCTTACTTGGCGTTCCACCCCTGCCAAAGAAAGACATC
rJMFF033B22+ CCACCCTCCGATTACTCTGAAGGCTTACTTGGCGTTCCACCCCTGCCAAAGAAAGACATC
rJMFF050M14+ CCACCCTCCGATTACTCTGAAGGCTTACTTGGCGTTCCACCCCTGCCAAAGAAAGACATC
                      ____________________________________________________________
consensus CCACCCTCCGATTACTCTGAAGGCTTACTTGGCGTTCCACCCCTGCCAAAGAAAGACATC
 
. : . : . : . : . : . :
rJMSF020I03+ CTCAGCTGGTACTAGGTTGTCTGCAGCCTCGCCTCGCCTCACCGCTCTATGGACCAAGAA
rJMSF028P15+ CTCAGCTGGTACTAGGTTGTCTGCAGCCTCGCCTCGCCTCACCGCTCTATGGACCAAGAA
rJMSF003B06+ CTCAGCTGGTACTAGGTTGTCTGCAGCCTCGCCTCGCCTCACCGCTCTATGGACCAAGAA
rJMFF033B22+ CTCAGCTGGTACTAGGTTGTCTGCAGCCTCGCCTCGCCTCACCGCTCTATGAACCAAGAA
rJMFF050M14+ CTCAGCTGGTACTAGGTTGTTTGCAGCCTCGCCTCGCCTCACCGCTTTATGGACCAAGAA
                      ____________________________________________________________
consensus CTCAGCTGGTACTAGGTTGTCTGCAGCCTCGCCTCGCCTCACCGCTCTATGGACCAAGAA
 
. : . : . : . : . : . :
rJMSF020I03+ CGCAACTCGATTTGGTCTGCCATTTTCAGGTCCAAAAACACCTTACAGCTATGCCATTTC
rJMSF028P15+ CGCAACTCGATTTGGTCTGCCATTTTCAGGTCCAAAAACACCTTACAGCTATGCCATTTC
rJMSF003B06+ CGCAACTCGATTTGGTCTGCCATTTTCAGGTCCAAAAACACCTTACAGCTATGCCATTTC
rJMFF033B22+ CGCAACTCGATTTGGTCTGCCATTTTCAGGTCCAAAAACACCTTACAGCTATGCCATTTC
rJMFF050M14+ CGCAACTCGATTTGGTCTGCCATTTTCAGGTCCAAAAACACCTTACAGCTATGCCATTTC
                      ____________________________________________________________
consensus CGCAACTCGATTTGGTCTGCCATTTTCAGGTCCAAAAACACCTTACAGCTATGCCATTTC
 
. : . : . : . : . : . :
rJMSF020I03+ CATTTCCATTTCCATTTCCCATATAGTTATAGAAAGTCAAAGGGTTATATTGCATGGAGA
rJMSF028P15+ CATTTCCATTTCCATTTCCCATATAGTTATAGAAAGTCAAAGGGTTATATTGCATGGAGA
rJMSF003B06+ CATTTCCATTTCCATTTCCCATATAGTTATAGAAAGTCAAAGGGTTATATTGCATGGAGA
rJMFF033B22+ CATTTCCATTTCCATTTCCCATATAGTTATAGAAAGTCAAAGGGTTATATTGCATGGAGA
rJMFF050M14+ CATTTCCATTTCCATTTCCCATATAGTTATAGAAAGTCAAAGGGTTATATTGCATGGAGA
                      ____________________________________________________________
consensus CATTTCCATTTCCATTTCCCATATAGTTATAGAAAGTCAAAGGGTTATATTGCATGGAGA
 
. : . : . : . : . : . :
rJMSF020I03+ ATATAATTCTCTCTTAGATTTGCTAAACTTATTATAGGTCTTTAATAAGTTCTATTTTTG
rJMSF028P15+ ATATAATTCTCTCTTAGATTTGCTAAACTTATTATAGGTCTTTAATAAGTTCTATTTTTG
rJMSF003B06+ ATATAATTCTCTCTTAGATTTGCTAAACTTATTATAGGTCTTTAATAAGTTCTATTTTTG
rJMFF033B22+ ATATAATTCTCTCTTAGATTTGCTAAACTTATTATAGGTCTTTAATAAGTTCTATTTTTG
rJMFF050M14+ ATATAATTCTCTCTTAGATTTGCTAAACTTATTATAGGTCTTTAATAAGTTCTATTTTTG
                      ____________________________________________________________
consensus ATATAATTCTCTCTTAGATTTGCTAAACTTATTATAGGTCTTTAATAAGTTCTATTTTTG
 
. : . : . : . : . : . :
rJMSF020I03+ ATCTTCCATATAGGAACTTTTATTATTATAATTATTGTTATGTGTAATCTGTCAAGCAAG
rJMSF028P15+ ATCTTCCATATAGGAACTTTTATTATTATAATTATTGTTATGTGTAATCTGTCAAGCAAG
rJMSF003B06+ ATCTTCCATATAGGAACTTTTATTATTATAATTATTGTTATGTGTAATCTGTCAAGCAAG
rJMFF033B22+ ATCTTCCATATAGGAACTTTTATTATTATAATTATTGTTATGTGTAATCTGTCAAGCAAG
rJMFF050M14+ ATCTTCCATATAGGAACTTTTATTATTATAATTATTGTTATGTGTAATCTGTCAAGCAAG
                      ____________________________________________________________
consensus ATCTTCCATATAGGAACTTTTATTATTATAATTATTGTTATGTGTAATCTGTCAAGCAAG
 
. : . : . : . : . : . :
rJMSF020I03+ CAAAGGGCAGTGCAAAATATGCCTTTGTTATATCTATTGTATCTTTT
rJMSF028P15+ CAAAGGGCAGTGCAAAATATGCCTTTGTTATATCTATTG
rJMSF003B06+ CAAAGGGCAGTGCAAAATATGCCTTTGTTATATCTATTGTATCTTTT
rJMFF033B22+ CAAAGGGCAGTGCAAAATATGCCTTTGTTATATCTATTGTATCTTTTTATAAGTTGGTTG
rJMFF050M14+ CAAAGGGCAGTGCAAAATATGCCTTTGTTATATCTATTGTATCTTTTTATAAGTTGGTTG
                      ____________________________________________________________
consensus CAAAGGGCAGTGCAAAATATGCCTTTGTTATATCTATTGTATCTTTTTATAAGTTGGTTG
 
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rJMFF033B22+ GTTA
rJMFF050M14+ GTTATGTTTGAATGTTAAAAATCTGTTCTTCCGAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus GTTATGTTTGAATGTTAAAAATCTGTTCTTCCGAAAAAAAAAAAAAAAACTCTCCAGGGT