Previous Contig 011017:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043F22Sequence590001845 (2)gb:AP004125_18379622e-66Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ17600011017 (2)gb:CAR276419_16452134e-18Cicer arietinum mRNA for 25.7 kDa protein.
JMFF050L11Sequence635001845 (2)gb:BT005472_16384127e-72Arabidopsis thaliana clone U50958 unknown protein (At1g44835) mRNA, complete cds622011017 (2)gb:CAR276419_16452134e-18Cicer arietinum mRNA for 25.7 kDa protein.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF043F22+ ACAAACAATAAATCAATTATACC
rJMFF050L11+ CAAACAATAAATCAATTATACC
                      ____________________________________________________________
consensus ACAAACAATAAATCAATTATACC
 
. : . : . : . : . : . :
rJMFF043F22+ TGCAGTGAAAGCTGTCAAGCCATCAGTAGATTCACAAAAGAAATCAACAAATGTTTTGGG
rJMFF050L11+ TGCAGTGAAAGCTGTCAAGCCATCAGTAGATTCACAAAAGAAATCAACAAATGTTTTGGG
                      ____________________________________________________________
consensus TGCAGTGAAAGCTGTCAAGCCATCAGTAGATTCACAAAAGAAATCAACAAATGTTTTGGG
 
. : . : . : . : . : . :
rJMFF043F22+ CCTGGCAAATAGTTTTGCTGATCCTAACAAATTTGTGGAAGAAGTCTTGGAAAAAACATC
rJMFF050L11+ CCTGGCAAATAGTTTTGCTGATCCTAACAAATTTGTGGAAGAAGTCTTGGAAAAAACATC
                      ____________________________________________________________
consensus CCTGGCAAATAGTTTTGCTGATCCTAACAAATTTGTGGAAGAAGTCTTGGAAAAAACATC
 
. : . : . : . : . : . :
rJMFF043F22+ TGCTATAATTCTCTCAGAGATCAAAGTGGAGAATGCAAAGCAAGATGGGGATCAACTTGG
rJMFF050L11+ TGCTATAATTCTCTCAGAGATCAAAGTGGAGAATGCAAAGCAAGATGGGGATCAACTTGG
                      ____________________________________________________________
consensus TGCTATAATTCTCTCAGAGATCAAAGTGGAGAATGCAAAGCAAGATGGGGATCAACTTGG
 
. : . : . : . : . : . :
rJMFF043F22+ CAGTGCATTAGTTGCTGATCTTAGGAAAAGGCTTTCAGAGGAGCTGGAGAGCATGGCTAC
rJMFF050L11+ CAGTGCATTAGTTGCTGATCTTAGGAAAAGGCTTTCAGAGGAGCTGGAGAGCATGGCTAC
                      ____________________________________________________________
consensus CAGTGCATTAGTTGCTGATCTTAGGAAAAGGCTTTCAGAGGAGCTGGAGAGCATGGCTAC
 
. : . : . : . : . : . :
rJMFF043F22+ AATGTTCAAGAATGTGGCATATACTGAAGGATTTGCTGCTGGTACTTGCAAACAGCCAAA
rJMFF050L11+ AATGTTCAAGAATGTGGCATATACTGAAGGATTTGCTGCTGGTACTTGCAAACAGCCAAA
                      ____________________________________________________________
consensus AATGTTCAAGAATGTGGCATATACTGAAGGATTTGCTGCTGGTACTTGCAAACAGCCAAA
 
. : . : . : . : . : . :
rJMFF043F22+ GCGGCTATGAAACAAGCAGGCAGTATTGGTGACTGGGATTCTTGATAATATACAAGAGGC
rJMFF050L11+ GCGGCTATGAAACAAGCAGGCAGTATTGGTGACTGGGATTCTTGATAATATACAAGAGGC
                      ____________________________________________________________
consensus GCGGCTATGAAACAAGCAGGCAGTATTGGTGACTGGGATTCTTGATAATATACAAGAGGC
 
. : . : . : . : . : . :
rJMFF043F22+ TCATTCAAGGATGCTGATACGGTCTAAATGGTACAATATCATCATTTCCTCATGTTAACA
rJMFF050L11+ TCATTCAAGGATGCTGATACGGTCTAAATGGTACAATATCATCATTTCCTCATGTTAACA
                      ____________________________________________________________
consensus TCATTCAAGGATGCTGATACGGTCTAAATGGTACAATATCATCATTTCCTCATGTTAACA
 
. : . : . : . : . : . :
rJMFF043F22+ ACTGTTCTTGTTTGAGTTTGAAAGCATTAATAGTCATAGATCGAGATTCTAGTGATGATG
rJMFF050L11+ ACTGTTCTTGTTTGAGTTTGAAAGCATTAATAGTCATAGATCGAGATTCTAGTGATGATG
                      ____________________________________________________________
consensus ACTGTTCTTGTTTGAGTTTGAAAGCATTAATAGTCATAGATCGAGATTCTAGTGATGATG
 
. : . : . : . : . : . :
rJMFF043F22+ TTTGCAATTTGAATTCAGTTTCTGATTTTGCACGAATATACTGAACGTAAGTGTGCTAAT
rJMFF050L11+ TTTGCAATTTGAATTCAGTTTCTGATTTTGCACGAATATACTGAACGTAAGTGTGCTAAT
                      ____________________________________________________________
consensus TTTGCAATTTGAATTCAGTTTCTGATTTTGCACGAATATACTGAACGTAAGTGTGCTAAT
 
. : . : . : . : . : . :
rJMFF043F22+ GTCTTTCATGAAGAAATAGAACTTTTTTCATTCCA
rJMFF050L11+ GTCTTTCATGAAGAAATAGAACTTTTTTCATTCCAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus GTCTTTCATGAAGAAATAGAACTTTTTTCATTCCAAAAAAAAAAAAAAACTCTCCAGGGT