| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009D04 | Sequence | 554 | 006803 (11) | gb:AY064138_1566019 | 4e-10 | Arabidopsis thaliana At1g07510/F22G5_9 mRNA, complete cds.>gb:AY124808_1580173 A | 742 | 010998 (6) | gb:AY064138_1566019 | 5e-72 | Arabidopsis thaliana At1g07510/F22G5_9 mRNA, complete cds.>gb:AY124808_1580173 A |
| JMFF034P23 | Sequence | 288 | 006803 (11) | gb:BT002743_1636346 | 5e-05 | Arabidopsis thaliana clone C104832 putative AAA-type ATPase (At2g29080) mRNA, co | 654 | 010998 (6) | gb:AF397903_1795883 | 1e-64 | Pisum sativum AAA-metalloprotease FtsH (FTSH) mRNA, complete cds; nuclear gene f |
| JMFF050H15 | Sequence | 636 | 006803 (11) | gb:AY064138_1566019 | 3e-15 | Arabidopsis thaliana At1g07510/F22G5_9 mRNA, complete cds.>gb:AY124808_1580173 A | 626 | 010998 (6) | gb:AF397903_1795883 | 1e-48 | Pisum sativum AAA-metalloprotease FtsH (FTSH) mRNA, complete cds; nuclear gene f |
| JMFS069A07 | Sequence | 618 | 010998 (6) | gb:AP003240_1826034 | e-100 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P040 | |||||
| JMSF032D11 | Sequence | 684 | 006803 (11) | gb:AF397903_1795883 | 2e-26 | Pisum sativum AAA-metalloprotease FtsH (FTSH) mRNA, complete cds; nuclear gene f | 834 | 010998 (6) | gb:AY064138_1566019 | 2e-97 | Arabidopsis thaliana At1g07510/F22G5_9 mRNA, complete cds.>gb:AY124808_1580173 A |
| JMSF053G09 | Sequence | 671 | 006803 (11) | gb:AY064138_1566019 | 6e-24 | Arabidopsis thaliana At1g07510/F22G5_9 mRNA, complete cds.>gb:AY124808_1580173 A | 902 | 010998 (6) | gb:AC105770_1738221 | e-113 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete s |
This contig is upended
. : . : . : . : . : . :
rJMSF053G09+ ACCCTGATAACTATGGACCATTTTTGAGTC
____________________________________________________________
consensus ACCCTGATAACTATGGACCATTTTTGAGTC
. : . : . : . : . : . :
rJMSF053G09+ AGCAATAGATAGGGTAATTGGTGGTCTTGAGAAGAAGAACAAGGTCATAAGCAAGCTGGA
____________________________________________________________
consensus AGCAATAGATAGGGTAATTGGTGGTCTTGAGAAGAAGAACAAGGTCATAAGCAAGCTGGA
. : . : . : . : . : . :
rJMSF032D11+ AAGGAGAACAGNTGCTTACCATGNATCTGGCCATGCAGTTGCTGGTTNGTTCTTGGAACA
JMFS069A07- AAGGAGAACAGTTGCTTACCATGAATCTGGCCATGCAGTTGCTGGTTGGTTCTTGGAACA
rJMSF053G09+ AAGGAGAACAGTTGCTTACCATGAATCTGGCCATGCAGTTGCTGGTTGGTTCTTGGAACA
____________________________________________________________
consensus AAGGAGAACAGTTGCTTACCATGAATCTGGCCATGCAGTTGCTGGTTGGTTCTTGGAACA
. : . : . : . : . : . :
rJMSF032D11+ TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
JMFS069A07- TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
rJMSF053G09+ TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
rJMFF009D04+ TTGC
____________________________________________________________
consensus TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
. : . : . : . : . : . :
rJMSF032D11+ TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
rJMFF034P23+ TGACAAAAGAACAACTCTTTGATATGACATG
JMFS069A07- TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
rJMSF053G09+ TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
rJMFF009D04+ TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTG--ATGACATG
____________________________________________________________
consensus TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
. : . : . : . : . : . :
rJMSF032D11+ CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
rJMFF034P23+ CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
JMFS069A07- CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
rJMSF053G09+ CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
rJMFF009D04+ CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
____________________________________________________________
consensus CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
. : . : . : . : . : . :
rJMSF032D11+ ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMFF034P23+ ACAGAATGATCTGGAGAAAGTCACCAAGANTGACATATGCCCAAGTGGCAGTGTATGGTT
JMFS069A07- ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMSF053G09+ ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMFF009D04+ ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMFF050H15+ ATATGCCCAAGTGGCAGTGTATGGTT
____________________________________________________________
consensus ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
. : . : . : . : . : . :
rJMSF032D11+ TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMFF034P23+ TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
JMFS069A07- TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMSF053G09+ TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMFF009D04+ TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMFF050H15+ TCAGTGACAAGGTTGGTCTGCTTTCTTTCCCTCCAAATGAAAATGCATTGNAGATGAGCA
____________________________________________________________
consensus TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
. : . : . : . : . : . :
rJMSF032D11+ AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMFF034P23+ AGCCTTACAGCAACAAAACTGCTGCCATCATTNACAATGAAGTTAGAGAATGGATTGCAA
JMFS069A07- AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMSF053G09+ AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMFF009D04+ AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMFF050H15+ AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
____________________________________________________________
consensus AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
. : . : . : . : . : . :
rJMSF032D11+ AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMFF034P23+ AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
JMFS069A07- AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMSF053G09+ AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMFF009D04+ AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMFF050H15+ AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
____________________________________________________________
consensus AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
. : . : . : . : . : . :
rJMSF032D11+ CTGAATTGTTACTTGAGAAGGGGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMFF034P23+ CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
JMFS069A07- CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMSF053G09+ CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMFF009D04+ CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMFF050H15+ CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
____________________________________________________________
consensus CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
. : . : . : . : . : . :
rJMSF032D11+ AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
rJMFF034P23+ AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
JMFS069A07- AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTA
rJMSF053G09+ AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
rJMFF009D04+ AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
rJMFF050H15+ AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
____________________________________________________________
consensus AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
. : . : . : . : . : . :
rJMSF032D11+ AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
rJMFF034P23+ AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGANGACT
rJMSF053G09+ AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
rJMFF009D04+ AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
rJMFF050H15+ AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
____________________________________________________________
consensus AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
. : . : . : . : . : . :
rJMSF032D11+ CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMFF034P23+ CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMSF053G09+ CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMFF009D04+ CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMFF050H15+ CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
____________________________________________________________
consensus CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
. : . : . : . : . : . :
rJMSF032D11+ ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMFF034P23+ ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMSF053G09+ ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMFF009D04+ ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMFF050H15+ ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
____________________________________________________________
consensus ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
. : . : . : . : . : . :
rJMSF032D11+ CCAGCT
rJMFF034P23+ CCAGCTATCAATNACAAGCAAGT
rJMSF053G09+ CCAGCTATCAATGACAAGCAAGTTTGGAGTTTT
rJMFF009D04+ CCAGCTATCAATGACAAGCAAGTTTGGAGTTTTTGCATGGTATTATACTATTACTCGTAA
rJMFF050H15+ CCAGCTATCAATGACAAGCAAGTTTGGAGTTTTTGCATGGTATTATACTATTACTCGTAA
____________________________________________________________
consensus CCAGCTATCAATGACAAGCAAGTTTGGAGTTTTTGCATGGTATTATACTATTACTCGTAA
. : . : . : . : . : . :
rJMFF009D04+ CAAATAAAAA-GAAAAAACAAA
rJMFF050H15+ CAAATAAAAATGAAAAAACAAATCTATTTGCCTAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus CAAATAAAAATGAAAAAACAAATCTATTTGCCTAAAAAAAAAAAAAAAACTCTCCAGGGT