Previous Contig 010971:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019L04Sequence596002142 (3)799010971 (3)gb:T3F20_17240276e-27Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete sequence.
JMFF021P22Sequence691010971 (3)gb:T3F20_17240276e-32Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete sequence.
JMFF050D14Sequence617002142 (3)gb:AP003628_18317090.018Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P047611010971 (3)gb:T3F20_17240272e-05Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete sequence.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF021P22+ CTCTTCGTGATGCTCTT
                      ____________________________________________________________
consensus CTCTTCGTGATGCTCTT
 
. : . : . : . : . : . :
rJMFF021P22+ GAGAAGATGAAACCATTCCTTATGGTGTATGAAGGAATTGAAAGCCAAGAAGAGTGGGAG
rJMFF019L04+ GAGAAGATGAAACCATTCCTTATGGTGTATGAAGGAATNGAAAGCCAAGAAGAGTGGGAG
                      ____________________________________________________________
consensus GAGAAGATGAAACCATTCCTTATGGTGTATGAAGGAATTGAAAGCCAAGAAGAGTGGGAG
 
. : . : . : . : . : . :
rJMFF021P22+ GAAGTCATGAAAGAAACCATGGAGGTGAGGCTCCCCATTATTAAAGAGATTGTTGATCAC
rJMFF019L04+ GAAGTCATGAAAGAANCCATGGAGGTGAGGCTCCCCATTATTAAAGAGATTGTTGATCAC
                      ____________________________________________________________
consensus GAAGTCATGAAAGAAACCATGGAGGTGAGGCTCCCCATTATTAAAGAGATTGTTGATCAC
 
. : . : . : . : . : . :
rJMFF021P22+ TACAGTGGCCCTGACAGAGTAACAGCAAAGCAGCAGCACGAGGAGTTGAACAGAGTTGCA
rJMFF019L04+ TACAGTGGCCCTGACAGAGTAACAGCAAAGCAGCAGCACGAGGAGTTGAACAGAGTTGCA
                      ____________________________________________________________
consensus TACAGTGGCCCTGACAGAGTAACAGCAAAGCAGCAGCACGAGGAGTTGAACAGAGTTGCA
 
. : . : . : . : . : . :
rJMFF021P22+ GCAACTCTCCCACAAAGGGCACCCACTTCTGTGAAGCTGTTCACGGAGCGTGCTGTTCAG
rJMFF019L04+ GCAACTCTCCCACAAAGGGCACCCACTTCTGTGAAGCTGTTCACGGAGCGTGCTGTTCAG
rJMFF050D14+ GTGCTGTTCAG
                      ____________________________________________________________
consensus GCAACTCTCCCACAAAGGGCACCCACTTCTGTGAAGCTGTTCACGGAGCGTGCTGTTCAG
 
. : . : . : . : . : . :
rJMFF021P22+ TCACTGCAGAGCAATCCAAGTTGGGGATTCCACAAAAAATGCCAGTTCATGGATAAGCTT
rJMFF019L04+ TCACTGCAGAGCAATCCAAGTTGGGGATTCCACAAAAAATGCCAGTTCATGGATAAGCTT
rJMFF050D14+ TCACTGCAGAGCAATCCAAGTTGGGGATTCCACAAAAAATGCCAGTTCATGGATAAGCTT
                      ____________________________________________________________
consensus TCACTGCAGAGCAATCCAAGTTGGGGATTCCACAAAAAATGCCAGTTCATGGATAAGCTT
 
. : . : . : . : . : . :
rJMFF021P22+ GTGTACGAGGTTTCCCAGCAATACAAGTGAACACGCGAGAACACTCGTAACCTTATGAGT
rJMFF019L04+ GTGTACGAGGTTTCCCAGCAATACAAGTGAACACGCGAGAACACTCGTAACCTTATGAGT
rJMFF050D14+ GTGTACGAGGTTTCCCAGCAATACAAGTGAACACGCGAGAACACTCGTAACCTTATGAGT
                      ____________________________________________________________
consensus GTGTACGAGGTTTCCCAGCAATACAAGTGAACACGCGAGAACACTCGTAACCTTATGAGT
 
. : . : . : . : . : . :
rJMFF021P22+ TCCGAATTCTTATAAAGATCATAAGGTGAACCTCGGTTAAACATGCCAAGACAAGTCTTG
rJMFF019L04+ TCCGAATTCTTATAAAGATCATAAGGTGAACCTCGGTTAAACATGCCAAGACAAGTCTTG
rJMFF050D14+ TCCGAATTCTTATAAAGATCATAAGGTGAACCTCGGTTAAACATGCCAAGACAAGTCTTG
                      ____________________________________________________________
consensus TCCGAATTCTTATAAAGATCATAAGGTGAACCTCGGTTAAACATGCCAAGACAAGTCTTG
 
. : . : . : . : . : . :
rJMFF021P22+ CATTTTCTGGCAGAGTGAATGCTGCTTCATTTTTATGTTACCTCGAGCAAACACCATAAC
rJMFF019L04+ CATTTTCTGGCAGAGTGAATGCTGCTTCATTTTTATGTTACCTCGAGCAAACACCATAAC
rJMFF050D14+ CATTTTCTGGCAGAGTGAATGCTGCTTCATTTTTATGTTACCTCGAGCAAACACCATAAC
                      ____________________________________________________________
consensus CATTTTCTGGCAGAGTGAATGCTGCTTCATTTTTATGTTACCTCGAGCAAACACCATAAC
 
. : . : . : . : . : . :
rJMFF021P22+ TTTTATAACAAGCTTTCTTTCCCGTTCAAAGCGATGGAATTGAATATATACAGAATACAG
rJMFF019L04+ TTTTATAACAAGCTTTCTTTCCCGTTCAAAGCGATGGAATTGAATATATACAGAATACAG
rJMFF050D14+ TTTTATAACAAGCTTTCTTTCCCGTTCAAAGCGATGGAATTGAATATATACAGAATACAG
                      ____________________________________________________________
consensus TTTTATAACAAGCTTTCTTTCCCGTTCAAAGCGATGGAATTGAATATATACAGAATACAG
 
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rJMFF021P22+ TTTTCAGCTGAATCTTTTCAAGTGTTGTGTTGTTTCCATTGCATGATTCTCATTTCTATT
rJMFF019L04+ TTTTCAGCTGAATCTTTTCAAGTGTTGTGTTGTTTCCATTGCATGATTCTCATTTCTATT
rJMFF050D14+ TTTTCAGCTGAATCTTTTCAAGTGTTGTGTTGTTTCCATTGCATGATTCTCATTTCTATT
                      ____________________________________________________________
consensus TTTTCAGCTGAATCTTTTCAAGTGTTGTGTTGTTTCCATTGCATGATTCTCATTTCTATT
 
. : . : . : . : . : . :
rJMFF021P22+ AACCATTTTATATGCTTTGAGACTCTGTAATTTTCCAACCTTGACTCTCTTCATTGT-CT
rJMFF019L04+ AACCATTTTATATGCTTTGAGACTCTGTAATTTTCCAACCTTGACTCTCTTCATTGTACT
rJMFF050D14+ AACCATTTTATATGCTTTGAGACTCTGTAATTTTCCAACCTTGACTCTCTTCATTGTACT
                      ____________________________________________________________
consensus AACCATTTTATATGCTTTGAGACTCTGTAATTTTCCAACCTTGACTCTCTTCATTGTACT
 
. : . : . : . : . : . :
rJMFF021P22+ TTTCTACCATCAATA
rJMFF019L04+ TTTCTACCATCAATAAGGTTTCAAGCTCTCTTCCCCTTGATACTGCCATTGCTGCTATCA
rJMFF050D14+ TTTCTACCATCAATAAGGTTTCAAGCTCTCTTCCCCTTGATACTGCCATTGCTGCTATCA
                      ____________________________________________________________
consensus TTTCTACCATCAATAAGGTTTCAAGCTCTCTTCCCCTTGATACTGCCATTGCTGCTATCA
 
. : . : . : . : . : . :
rJMFF019L04+ TTTATCATATTCAAGAAAGCTATATCAGTATCTCTATTGAGAAAAACAATTAATCATTAT
rJMFF050D14+ TTTATCATATTCAAGAAAGCTATATCAGTATCTCTATTGAGAAAAACAATTAATCATTAT
                      ____________________________________________________________
consensus TTTATCATATTCAAGAAAGCTATATCAGTATCTCTATTGAGAAAAACAATTAATCATTAT
 
. : . : . : . : . : . :
rJMFF019L04+ GTATTGTCA-TGAGAAAAAG
rJMFF050D14+ GTATTGTCATTGAGAAAAAGGATTAATACTGCCAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus GTATTGTCATTGAGAAAAAGGATTAATACTGCCAAAAAAAAAAAAAAAACTCTCCAGGGT