Previous Contig 010912:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001N04Sequence195001385 (6)gb:ATF5E19_15507653e-04Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project).>gb:ATI134700010912 (6)gb:AE016959_10239631e-25Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence.>gb:AC01
JMFF018E20Sequence567001385 (6)gb:AY172635_15867815e-43Zea mays inositol phosphate kinase mRNA, complete cds.696010912 (6)gb:ATF5E19_15507658e-24Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project).>gb:ATI134
JMFF023A23Sequence409001385 (6)gb:AY172635_15867819e-29Zea mays inositol phosphate kinase mRNA, complete cds.691010912 (6)gb:ATF5E19_15507652e-23Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project).>gb:ATI134
JMFF030F12Sequence515001385 (6)gb:AY172635_15867819e-16Zea mays inositol phosphate kinase mRNA, complete cds.632010912 (6)gb:AE016959_10239631e-18Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence.>gb:AC01
JMFF049I05Sequence505001385 (6)gb:AY172635_15867811e-32Zea mays inositol phosphate kinase mRNA, complete cds.497010912 (6)
JMSF033H17Sequence140001385 (6)686010912 (6)gb:ATF5E19_15507651e-25Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project).>gb:ATI134

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF033H17+ AGAAAAATGTTGATAAGTACTGTAA
rJMFF001N04+ ACTGTCGTACTAATGAGAAAAATGTTGATAAGTACTGTAA
rJMFF023A23+ AGAAAAATGTTGATAAGTACTGTAA
rJMFF018E20+ AGAAAAATGTTGATAAGTCCTGTAA
                      ____________________________________________________________
consensus ACTGTCGTACTAATGAGAAAAATGTTGATAAGTACTGTAA
 
. : . : . : . : . : . :
rJMSF033H17+ GATGATGAATTTGGAGGATGCAGAGTTGCCCCCTTTGAGTTTCCTCACAGAAATAG-CCA
rJMFF001N04+ GATGATGAATTTGGAGGATGCAGAGTTGCCCCCTTTGAGTTTCCTCACAGAAATAG-CCA
rJMFF023A23+ GATGATGAATTTGGAGGATGCAGAGTTGCCCCCTTTGAGTTTCCTCACAGAAATAG-CCA
rJMFF018E20+ GATGATGAATTTGGAGGATGCAGAGTTGCCCCCTTTGAGTTTCCTCACAGAAATAG-CCA
rJMFF030F12+ CACAGAAATAGNCCA
                      ____________________________________________________________
consensus GATGATGAATTTGGAGGATGCAGAGTTGCCCCCTTTGAGTTTCCTCACAGAAATAG-CCA
 
. : . : . : . : . : . :
rJMSF033H17+ GGGGGCTTAGGCGAGCAACAAGGTTGCATCTTTTTAACTTTGATGTGATTAGGGACAATA
rJMFF001N04+ GGGGGCTTAGGCGAGCAACAAGGTTGCATCTTTTTAACTTTGATGTGATTAGGGACAATA
rJMFF023A23+ GGGGGCTTAGGCGAGCAACAAGGTTGCATCTTTTTAACTTTGATGTGATTAGGGACAATA
rJMFF018E20+ GGGGGCTTAGGCGAGCAACAAGGTTGCATCTTTTTAACTTTGATGTGATTAGGGACAATA
rJMFF030F12+ GGGGGCTTAGGCGAGCAACAAGGTTGCATCTTTTTAACTTTGATGTGATTAGGGACAATA
                      ____________________________________________________________
consensus GGGGGCTTAGGCGAGCAACAAGGTTGCATCTTTTTAACTTTGATGTGATTAGGGACAATA
 
. : . : . : . : . : . :
rJMSF033H17+ AGGTTGGGAATAGGTACCTTGTTATTGACATTAACTACTTCCCCGGGTATGCGAAGATGC
rJMFF001N04+ AGGTTGGGAATAGGTACCTTGTTATTGACATTAACTACTTCCCCGGGTATGCGAAGATGC
rJMFF023A23+ AGGTTGGGAATAGGTACCTTGTTATTGACATTAACTACTTCCCCGGGTATGCGAAGATGC
rJMFF018E20+ AGGTTGGGAATAGGTACCTTGTTATTGACATTAACTACTTCCCCGGGTATGCGAAGATGC
rJMFF030F12+ AGGTTGGGAATAGGTACCTTGTTATTGACATTAACTACTTCCCCGGGTATGCGAAGATGC
                      ____________________________________________________________
consensus AGGTTGGGAATAGGTACCTTGTTATTGACATTAACTACTTCCCCGGGTATGCGAAGATGC
 
. : . : . : . : . : . :
rJMSF033H17+ CGAATTATGAGTCTGTCATGACTGAATTTTTCTGGGATGTCTTAAGTAAAAAAGAGAAGA
rJMFF001N04+ CGAATTATGAGTCTGTCATGACTGAATTTTTCTGGGATGTCTTAAGTAAAAAAGAGAAGA
rJMFF023A23+ CGAATTATGAGTCTGTCATGACTGAATTTTTNTGGGATGTCTTAAGTAAAAAAGAGAAGA
rJMFF018E20+ CGAATTATGAGTCTGTCATGACTGAATTTTTCTGGGATGTCTTAAGTAAAAAAGAGAAGA
rJMFF030F12+ CGAATTATGAGTCTGTCATGACTGAATTTTTCTGGGATGTCTTAAGTAAAAAAGAGAAGA
rJMFF049I05+ TAAGTAAAAAAGAGAAGA
                      ____________________________________________________________
consensus CGAATTATGAGTCTGTCATGACTGAATTTTTCTGGGATGTCTTAAGTAAAAAAGAGAAGA
 
. : . : . : . : . : . :
rJMSF033H17+ CTTCAGAGAGTTTCAGGAAGCTTGGATGTGAAAAAGAAGTGAGGATATTGGTTGGAAACN
rJMFF001N04+ CTTCAGAGAGTTTCA-GTAGCTTGGATGTGAAAAAGAAGTGAGGATATTGGTTGGAAACN
rJMFF023A23+ CTTCAGAGAGTTTCA-GTAGCTTGGATGTGAAAAAGAAGTGAGGATATTGGTTGGAAACN
rJMFF018E20+ CTTCAGAGAGTTTCA-GTAGCTTGGATGTGAAAAAGAAGTGAGGATATTGGTTGGAAACN
rJMFF030F12+ CTTCAGAGAGTTTCAGGAAGCTTGGATGTGAAAAAGAAGTGAGGATATTGGTTGGAAACN
rJMFF049I05+ CTTCAGAGAGTTCCA-GTAGCTTGGATGTGAAAAAGAAGTGAGGATATTGGTTGGAAACA
                      ____________________________________________________________
consensus CTTCAGAGAGTTTCA-GTAGCTTGGATGTGAAAAAGAAGTGAGGATATTGGTTGGAAACA
 
. : . : . : . : . : . :
rJMSF033H17+ CTGGATATGATGAAGATGAAGTCGCNTTGCCTGTTTCACCTCTTAAGAGGGAGGAGAATG
rJMFF001N04+ CTGGATATGATGAAGATGAAGTCGCATTGCCTGTTTCACCTNTTAAGAGGGAGGAGAATG
rJMFF023A23+ CTGGATATGATGAAGATGAAGTCGCATTGCCTGTTTCACCTNTTAAGAGGGAGGAGAATG
rJMFF018E20+ CTGGATATGATGAAGATGAAGTCGCATTGCCTGTTTCACCTCTTAAGAGGGAGGAGAATG
rJMFF030F12+ CTGGATATGATGAAGATGAAGTCGCATTGCCTGTTTCACCTCTTAAGAGGGAGGAGAATG
rJMFF049I05+ CTGGATATGATGAAGATGAAGTCGCATTGCCTGTTTCACCTCTTAAGAGGGAGGAGAATG
                      ____________________________________________________________
consensus CTGGATATGATGAAGATGAAGTCGCATTGCCTGTTTCACCTCTTAAGAGGGAGGAGAATG
 
. : . : . : . : . : . :
rJMSF033H17+ AGAGTGCTATCCAGGTCTGAGGATGTCGCNCTGGCCTTGCAAATTCCAAGGTTTGGTCAG
rJMFF001N04+ AGAGTGCTATCCAGGTNTGAGGATGTCGCACTGGCCTTGCAAATTCCAAGGTTTGGTCAG
rJMFF023A23+ AGAGTGCTATCCAGGTNTGAGGATGTCGCACTGGCCTTGCAAATTCCAAGGTTTGGTCAG
rJMFF018E20+ AGAGTGCTATCCAGGTNTGAGGATGTCGCACTGGCCTTGCAAATTCCAAGGTTTGGTCAG
rJMFF030F12+ AGAGTGCTATCCAGGTNTGAGGATGTCGCACTGGCCTTGCAAATTCCAAGGTTTGGTCAG
rJMFF049I05+ AGAGTGCTATCCAGGTCTGAGGATGTCGCACTGGCCTTGCAAATTCCAAGGTTTGGTCAG
                      ____________________________________________________________
consensus AGAGTGCTATCCAGGTCTGAGGATGTCGCACTGGCCTTGCAAATTCCAAGGTTTGGTCAG
 
. : . : . : . : . : . :
rJMSF033H17+ AAAAAAAAAATTGCTAAAAGATAGTGATCTTTCTCTTGGTTTGCAGGGTTTTCTTTTAGG
rJMFF001N04+ AAAAAAAAAATTGCTAAAAGATAGTGATCTTTCTCTTGGTTTGCAGGGTTTTCTTTTAGG
rJMFF023A23+ AAAAAAAAAATTGCTAAAAGATAGTGATCTTTCTCTTGGTTTGCAGGGTTTTCTTTTAGG
rJMFF018E20+ AAAAAAAAAATTGCTAAAAGATAGTGATCTTTCTCTTGGTTTGCAGGGTTTTCTTTTAGG
rJMFF030F12+ AAAAAAAAAATTGCTAAAAGATAGTGATCTTTCTCTTGGTTTGCAGGGTTTTCTTTTAGG
rJMFF049I05+ AAAAAAAAAATTGCTAAAAGATAGTGATCTTTCTCTTGGTTTGCAGGGTTTTCTTTTAGG
                      ____________________________________________________________
consensus AAAAAAAAAATTGCTAAAAGATAGTGATCTTTCTCTTGGTTTGCAGGGTTTTCTTTTAGG
 
. : . : . : . : . : . :
rJMSF033H17+ TAGAGAGTTAGTACAGCAGTAATAACTAGGTTCTTGGCTTTGTTCTGGCCCCATGAAAGT
rJMFF001N04+ TAGAGAGTTAGTACAGCAGTAATAACTAGGTTCTTGGCTTTGTTCTGGCCCCATGAAAGT
rJMFF023A23+ TAGAGAGTTAGTACAGCAGTAATAACTAGGTTCTTGGCTTTGTTCTGGCCCCATGAAAGT
rJMFF018E20+ TAGAGAGTTAGTACAGCAGTAATAACTAGGTTCTTGGCTTTGTTCTGGCCCCATGAAAGT
rJMFF030F12+ TAGAGAGTTAGTACAGCAG-------TAGGTTCTTGGCTTTGTTCTGGCCCCATGAAAGT
rJMFF049I05+ TAGAGAGTTAGTACAGCAGTAATAACTAGGTTCTTGGCTTTGTTCTGGCCCCATGAAAGT
                      ____________________________________________________________
consensus TAGAGAGTTAGTACAGCAGTAATAACTAGGTTCTTGGCTTTGTTCTGGCCCCATGAAAGT
 
. : . : . : . : . : . :
rJMSF033H17+ TCTTTGTTGAAATGTACAATTCCATCTTTGCAGTGGAGATAGGTACTTTGCAAATACTCT
rJMFF001N04+ TCTTTGTTGAAATGTACAATTCCATCTTTGCAGTGGAGATAGGTACTTTGCAAATACTCT
rJMFF023A23+ TCTTTGTTGAAATGTACAATTCCATCTTTGCAGTGGAGATAGGTACTTTGCAAATACTCT
rJMFF018E20+ TCTTTGTTGAAATGTACAATTCCATCTTTGCAGTGGAGATAGGTACTTTGCAAATACTCT
rJMFF030F12+ TCTTTGTTGAAATGTACAATTCCATCTTTGCAGTGGAGATAGGTACTTTGCAAATACTCT
rJMFF049I05+ TCTTTGTTGAAATGTACAATTCCATCTTTGCAGTGGAGATAGGTACTTTGCAAATACTCT
                      ____________________________________________________________
consensus TCTTTGTTGAAATGTACAATTCCATCTTTGCAGTGGAGATAGGTACTTTGCAAATACTCT
 
. : . : . : . : . : . :
rJMSF033H17+ TTTCTAGGAAAGCTAAAGTTTTCCTTCAAGGCAAATGTATTTCCTGGCTCAGAAAATATC
rJMFF001N04+ TTTCTAGGAAAGCTAAAGTTTTCCTTCAAGGCAAATGTATTTCCTGGCTCAGAAAATATC
rJMFF023A23+ TTTCTAGGAAAGCTAAAGTTTTCCTTCAAGGCAAATGTATTTCCTGGCTCAGAAAATATC
rJMFF018E20+ TTTCTAGGAAAGCTAAAGTTTTCCTTCAAGGCAAATGTATTTCCTGGCTCAGAAAATATC
rJMFF030F12+ TTTCTAGGAAAGCTAAAGTTTTCCTTCAAGGCAAATGTATTTCCTGGCTCAGAAAATATC
rJMFF049I05+ TTTCTAGGAAAGCTAAAGTTTTCCTTCAAGGCAAATGTATTTCCTGGCTCAGAAAATATC
                      ____________________________________________________________
consensus TTTCTAGGAAAGCTAAAGTTTTCCTTCAAGGCAAATGTATTTCCTGGCTCAGAAAATATC
 
. : . : . : . : . : . :
rJMSF033H17+ TT
rJMFF001N04+ TT
rJMFF023A23+ TTAAACCT
rJMFF018E20+ TTAAACCT
rJMFF030F12+ TTAAACCTCTGCCTTTAACAACTT
rJMFF049I05+ TTAAACCTCTGCCTTTAACAACTTTGATCXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGT
                      ____________________________________________________________
consensus TTAAACCTCTGCCTTTAACAACTTTGATCNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGT