Previous Contig 010797:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048C12Sequence390006546 (3)gb:AB005249_15096575e-08Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12.>gb:BT015345_1642243010797 (3)
JMSF028N04Sequence647006546 (3)gb:AB005249_15096572e-12Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12.>gb:BT015345_1642704010797 (3)gb:AB005249_15096576e-60Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12.>gb:BT015345_1642
JMSF035M12Sequence632006546 (3)gb:AB005249_15096572e-52Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12.>gb:BT015345_1642763010797 (3)gb:AB005249_15096574e-70Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12.>gb:BT015345_1642

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035M12+ TGGTATGTAGATCAGCTTGGGATGGCGGCCAAGTAC
                      ____________________________________________________________
consensus TGGTATGTAGATCAGCTTGGGATGGCGGCCAAGTAC
 
. : . : . : . : . : . :
rJMSF028N04+ GGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
rJMSF035M12+ NAGACAAAAGTTTATTGCAGGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
                      ____________________________________________________________
consensus NAGACAAAAGTTTATTGCAGGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
 
. : . : . : . : . : . :
rJMSF028N04+ AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
rJMSF035M12+ AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
                      ____________________________________________________________
consensus AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
 
. : . : . : . : . : . :
rJMSF028N04+ AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
rJMSF035M12+ AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
                      ____________________________________________________________
consensus AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
 
. : . : . : . : . : . :
rJMSF028N04+ ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
rJMSF035M12+ ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
                      ____________________________________________________________
consensus ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
 
. : . : . : . : . : . :
rJMSF028N04+ AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
rJMSF035M12+ AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
                      ____________________________________________________________
consensus AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
 
. : . : . : . : . : . :
rJMSF028N04+ AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
rJMSF035M12+ AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
                      ____________________________________________________________
consensus AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
 
. : . : . : . : . : . :
rJMSF028N04+ TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
rJMSF035M12+ TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
                      ____________________________________________________________
consensus TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
 
. : . : . : . : . : . :
rJMSF028N04+ AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
rJMSF035M12+ AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
                      ____________________________________________________________
consensus AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
 
. : . : . : . : . : . :
rJMSF028N04+ AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
rJMSF035M12+ AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
rJMFF048C12+ ATC
                      ____________________________________________________________
consensus AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
 
. : . : . : . : . : . :
rJMSF028N04+ AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
rJMSF035M12+ AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
rJMFF048C12+ AAATTCATGGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
                      ____________________________________________________________
consensus AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
 
. : . : . : . : . : . :
rJMSF028N04+ TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
rJMSF035M12+ TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
rJMFF048C12+ TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
                      ____________________________________________________________
consensus TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
 
. : . : . : . : . : . :
rJMSF028N04+ ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTT
rJMSF035M12+ ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTT
rJMFF048C12+ ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTTTCTTTCCACTT
                      ____________________________________________________________
consensus ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTTTCTTTCCACTT
 
. : . : . : . : . : . :
rJMFF048C12+ TGGCATATACCTTCAATATGAATAAATGTTCCAAAATCAATACATTTTTTTCCTTCCACG
                      ____________________________________________________________
consensus TGGCATATACCTTCAATATGAATAAATGTTCCAAAATCAATACATTTTTTTCCTTCCACG