Previous Contig 010752:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005I09Sequence607010752 (5)gb:AF114750_17692153e-62Arabidopsis thaliana v-SNARE AtVTI1a (VTI1a) mRNA, complete cds.
JMFF025I20Sequence435010752 (5)gb:AK118255_18162428e-43Arabidopsis thaliana At3g29100 mRNA for putative vesicle transport protein, comp
JMFF047J09Sequence638010752 (5)sp|Q9SEL6|VT11_ARATH2e-59Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a)602010752 (5)gb:AK118255_18162423e-46Arabidopsis thaliana At3g29100 mRNA for putative vesicle transport protein, comp
JMFN018C18Sequence599010752 (5)gb:AP003273_18269538e-64Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P051

Alignment

This contig is upended


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JMFF047J09-                                                 GTTGAACCGACCAACGGAATAC
                      ____________________________________________________________
consensus                                                   GTTGAACCGACCAACGGAATAC
 
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JMFF047J09-           XXXXXXXXXXXXXXXXXXXCAAAAGGCGATCAATCTCCGTCCGGCCGGCGAATTTTCCGG
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNCAAAAGGCGATCAATCTCCGTCCGGCCGGCGAATTTTCCGG
 
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JMFF047J09-           CAATCCTGCGATCACTTCAAGGTAATCAGTGTAAACCTAGCTAACAGAATGAGTCAGGTG
                      ____________________________________________________________
consensus             CAATCCTGCGATCACTTCAAGGTAATCAGTGTAAACCTAGCTAACAGAATGAGTCAGGTG
 
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JMFF047J09-           TTCGAAGGATACGAACGGCAATATTGTGAGCTTTCCGCTAATTTAACGAAGAAGTGCACC
                      ____________________________________________________________
consensus             TTCGAAGGATACGAACGGCAATATTGTGAGCTTTCCGCTAATTTAACGAAGAAGTGCACC
 
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JMFF047J09-           TCAGCTACTCTCCTTGATGGAGAGCAAAAGAAGCAGAAAATTTCCGAAGTAAAAAATGGA
rJMFF005I09+                         GATGGAGAGCAAAAGAAGCAGAAAATTTCCGAAGTAAAAAATGGA
JMFN018C18-                                                                   TGGA
                      ____________________________________________________________
consensus             TCAGCTACTCTCCTTGATGGAGAGCAAAAGAAGCAGAAAATTTCCGAAGTAAAAAATGGA
 
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JMFF047J09-           ATGGAAGATGCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
rJMFF005I09+          ATGGAAGATGCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
JMFN018C18-           ATGGAAGATTCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
rJMFF047J09+                                                                    CA
                      ____________________________________________________________
consensus             ATGGAAGATGCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
 
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JMFF047J09-           AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
rJMFF005I09+          AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
rJMFF025I20+                         CTTCTTGCAAAGTTAAGAGAATATAAAAGTGATCNGAACAATTTG
JMFN018C18-           AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
rJMFF047J09+          AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
                      ____________________________________________________________
consensus             AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
 
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JMFF047J09-           AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
rJMFF005I09+          AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
rJMFF025I20+          AAAANTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCNTCAAGGGATGAGTTG
JMFN018C18-           AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
rJMFF047J09+          AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
                      ____________________________________________________________
consensus             AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
 
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JMFF047J09-           TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
rJMFF005I09+          TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
rJMFF025I20+          TTGGAATNTGGGATGGCAGATGNTAAGATGGTATNTGCTGATCAAAGGCAAAGGTTGATG
JMFN018C18-           TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
rJMFF047J09+          TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
                      ____________________________________________________________
consensus             TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
 
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JMFF047J09-           ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
rJMFF005I09+          ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
rJMFF025I20+          ATGTCANNTGAGAGANTAANCNAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
JMFN018C18-           ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
rJMFF047J09+          ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
                      ____________________________________________________________
consensus             ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
 
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JMFF047J09-           CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTNCAGATCTGCGCCAACAACGTCAGTCT
rJMFF005I09+          CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCGCCAACAACGTCAGTCT
rJMFF025I20+          CTGGAAACCGAAGANCTTGGAGTTTCAATTNTTCAAGATCTGCACCAACNACGTCAGTCT
JMFN018C18-           CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCACCAACAACGTCAGTCT
rJMFF047J09+          CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCGCCAACAACGTCAGTCT
                      ____________________________________________________________
consensus             CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCGCCAACAACGTCAGTCT
 
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JMFF047J09-           CTCCTGCATGCACATG                                            
rJMFF005I09+          CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
rJMFF025I20+          CTNCCGCATGCACATGATNCGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
JMFN018C18-           CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
rJMFF047J09+          CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
                      ____________________________________________________________
consensus             CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
 
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rJMFF005I09+          ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
rJMFF025I20+          ATNCTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
JMFN018C18-           ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
rJMFF047J09+          ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
                      ____________________________________________________________
consensus             ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
 
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rJMFF005I09+          GCTGTCNTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGT     
rJMFF025I20+          GCTGTCNTAGTGGTTGCAATCATAT                                   
JMFN018C18-           GCTGTCCTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGT     
rJMFF047J09+          GCTGTCCTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGTTGAAG
                      ____________________________________________________________
consensus             GCTGTCCTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGTTGAAG
 
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rJMFF047J09+          TGTCCCAGGCTTTGGATATGGCTGACATATGTTGTTTTCTTTTTTTGATTTCTGGTTCTC
                      ____________________________________________________________
consensus             TGTCCCAGGCTTTGGATATGGCTGACATATGTTGTTTTCTTTTTTTGATTTCTGGTTCTC
 
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rJMFF047J09+          TGGTGTCCTTGTGTGGAATTTGAAACTGCATTTCTATGTTTGCAATTCTTATATAATGGC
                      ____________________________________________________________
consensus             TGGTGTCCTTGTGTGGAATTTGAAACTGCATTTCTATGTTTGCAATTCTTATATAATGGC