clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005I09 | Sequence | 607 | 010752 (5) | gb:AF114750_1769215 | 3e-62 | Arabidopsis thaliana v-SNARE AtVTI1a (VTI1a) mRNA, complete cds. | |||||
JMFF025I20 | Sequence | 435 | 010752 (5) | gb:AK118255_1816242 | 8e-43 | Arabidopsis thaliana At3g29100 mRNA for putative vesicle transport protein, comp | |||||
JMFF047J09 | Sequence | 638 | 010752 (5) | sp|Q9SEL6|VT11_ARATH | 2e-59 | Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a) | 602 | 010752 (5) | gb:AK118255_1816242 | 3e-46 | Arabidopsis thaliana At3g29100 mRNA for putative vesicle transport protein, comp |
JMFN018C18 | Sequence | 599 | 010752 (5) | gb:AP003273_1826953 | 8e-64 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P051 |
This contig is upended
. : . : . : . : . : . :
JMFF047J09- GTTGAACCGACCAACGGAATAC
____________________________________________________________
consensus GTTGAACCGACCAACGGAATAC
. : . : . : . : . : . :
JMFF047J09- XXXXXXXXXXXXXXXXXXXCAAAAGGCGATCAATCTCCGTCCGGCCGGCGAATTTTCCGG
____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNCAAAAGGCGATCAATCTCCGTCCGGCCGGCGAATTTTCCGG
. : . : . : . : . : . :
JMFF047J09- CAATCCTGCGATCACTTCAAGGTAATCAGTGTAAACCTAGCTAACAGAATGAGTCAGGTG
____________________________________________________________
consensus CAATCCTGCGATCACTTCAAGGTAATCAGTGTAAACCTAGCTAACAGAATGAGTCAGGTG
. : . : . : . : . : . :
JMFF047J09- TTCGAAGGATACGAACGGCAATATTGTGAGCTTTCCGCTAATTTAACGAAGAAGTGCACC
____________________________________________________________
consensus TTCGAAGGATACGAACGGCAATATTGTGAGCTTTCCGCTAATTTAACGAAGAAGTGCACC
. : . : . : . : . : . :
JMFF047J09- TCAGCTACTCTCCTTGATGGAGAGCAAAAGAAGCAGAAAATTTCCGAAGTAAAAAATGGA
rJMFF005I09+ GATGGAGAGCAAAAGAAGCAGAAAATTTCCGAAGTAAAAAATGGA
JMFN018C18- TGGA
____________________________________________________________
consensus TCAGCTACTCTCCTTGATGGAGAGCAAAAGAAGCAGAAAATTTCCGAAGTAAAAAATGGA
. : . : . : . : . : . :
JMFF047J09- ATGGAAGATGCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
rJMFF005I09+ ATGGAAGATGCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
JMFN018C18- ATGGAAGATTCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
rJMFF047J09+ CA
____________________________________________________________
consensus ATGGAAGATGCGGAGGCATTGATCCGCAAAATGGATCTTGAGGCTAGGAGTTTACCACCA
. : . : . : . : . : . :
JMFF047J09- AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
rJMFF005I09+ AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
rJMFF025I20+ CTTCTTGCAAAGTTAAGAGAATATAAAAGTGATCNGAACAATTTG
JMFN018C18- AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
rJMFF047J09+ AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
____________________________________________________________
consensus AATGCAAAAGCCATGCTTCTTGCAAAGTTAAGAGAATATAAAAGTGATTTGAACAATTTG
. : . : . : . : . : . :
JMFF047J09- AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
rJMFF005I09+ AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
rJMFF025I20+ AAAANTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCNTCAAGGGATGAGTTG
JMFN018C18- AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
rJMFF047J09+ AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
____________________________________________________________
consensus AAAACTGAAGTGAAAAGAATTACATCAGATAATGCTAACCAAGCCTCAAGGGATGAGTTG
. : . : . : . : . : . :
JMFF047J09- TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
rJMFF005I09+ TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
rJMFF025I20+ TTGGAATNTGGGATGGCAGATGNTAAGATGGTATNTGCTGATCAAAGGCAAAGGTTGATG
JMFN018C18- TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
rJMFF047J09+ TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
____________________________________________________________
consensus TTGGAATCTGGGATGGCAGATGCTAAGATGGTATCTGCTGATCAAAGGCAAAGGTTGATG
. : . : . : . : . : . :
JMFF047J09- ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
rJMFF005I09+ ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
rJMFF025I20+ ATGTCANNTGAGAGANTAANCNAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
JMFN018C18- ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
rJMFF047J09+ ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
____________________________________________________________
consensus ATGTCAACTGAGAGATTAAACAAGTCCAGTGATAGAATCAGAGAAGGCCGGAAAGTTATG
. : . : . : . : . : . :
JMFF047J09- CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTNCAGATCTGCGCCAACAACGTCAGTCT
rJMFF005I09+ CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCGCCAACAACGTCAGTCT
rJMFF025I20+ CTGGAAACCGAAGANCTTGGAGTTTCAATTNTTCAAGATCTGCACCAACNACGTCAGTCT
JMFN018C18- CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCACCAACAACGTCAGTCT
rJMFF047J09+ CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCGCCAACAACGTCAGTCT
____________________________________________________________
consensus CTGGAAACCGAAGAACTTGGAGTTTCAATTCTTCAAGATCTGCGCCAACAACGTCAGTCT
. : . : . : . : . : . :
JMFF047J09- CTCCTGCATGCACATG
rJMFF005I09+ CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
rJMFF025I20+ CTNCCGCATGCACATGATNCGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
JMFN018C18- CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
rJMFF047J09+ CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
____________________________________________________________
consensus CTCCTGCATGCACATGATACGCTTCATGGGGTGGATGACAATATCAGCAGGAGCAAGAAG
. : . : . : . : . : . :
rJMFF005I09+ ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
rJMFF025I20+ ATNCTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
JMFN018C18- ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
rJMFF047J09+ ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
____________________________________________________________
consensus ATACTGACCACAATGTCAAGAAGGATGAACAGGAACAAATGGATCATCGGTTCAATCATT
. : . : . : . : . : . :
rJMFF005I09+ GCTGTCNTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGT
rJMFF025I20+ GCTGTCNTAGTGGTTGCAATCATAT
JMFN018C18- GCTGTCCTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGT
rJMFF047J09+ GCTGTCCTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGTTGAAG
____________________________________________________________
consensus GCTGTCCTAGTGGTTGCAATCATATTGATTGTTTATTTCAAGCTTAGCCATTAGTTGAAG
. : . : . : . : . : . :
rJMFF047J09+ TGTCCCAGGCTTTGGATATGGCTGACATATGTTGTTTTCTTTTTTTGATTTCTGGTTCTC
____________________________________________________________
consensus TGTCCCAGGCTTTGGATATGGCTGACATATGTTGTTTTCTTTTTTTGATTTCTGGTTCTC
. : . : . : . : . : . :
rJMFF047J09+ TGGTGTCCTTGTGTGGAATTTGAAACTGCATTTCTATGTTTGCAATTCTTATATAATGGC
____________________________________________________________
consensus TGGTGTCCTTGTGTGGAATTTGAAACTGCATTTCTATGTTTGCAATTCTTATATAATGGC