Previous Contig 010614:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044E20Sequence619006201 (3)gb:AB017069_15134735e-50Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ8.>gb:AY052284_15626643010614 (3)
JMFF046C01Sequence597006201 (3)gb:AB017069_15134731e-48Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ8.>gb:AY052284_15626594010614 (3)
JMSF024D17Sequence724006201 (3)gb:AB017069_15134732e-49Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ8.>gb:AY052284_15626779010614 (3)gb:AP005841_18589052e-08Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJN

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024D17+ TCTCATCAGGTTCCATCCCACTTGCTTACAGGTCG
                      ____________________________________________________________
consensus TCTCATCAGGTTCCATCCCACTTGCTTACAGGTCG
 
. : . : . : . : . : . :
rJMSF024D17+ AGAAGGTCCAACTGCTCCCAAAGGTTGTAGGGAGTTGGATCCAGCTGCCATGCCTTCTGA
                      ____________________________________________________________
consensus AGAAGGTCCAACTGCTCCCAAAGGTTGTAGGGAGTTGGATCCAGCTGCCATGCCTTCTGA
 
. : . : . : . : . : . :
rJMFF044E20+ TTCCAGATGCTAATGAGGTGNAATGCATAATTGACGAGGGAAAGGA
rJMSF024D17+ ACTTCTTCATGTTATTCCAGATGCTAATGAGGTTGAATGCATAATTGACGAGGGAAAGGA
                      ____________________________________________________________
consensus ACTTCTTCATGTTATTCCAGATGCTAATGAGGTTGAATGCATAATTGACGAGGGAAAGGA
 
. : . : . : . : . : . :
rJMFF044E20+ AGAAAATATAAGTGGTCATATAGGGAAGACTACCACCAAGGAGGAAGTAGAGTGTTCCAT
rJMSF024D17+ AGAAAATATAAGTGGTCATATAGGGAAGACTACCACCAAGGAGGAAGTAGAGTGTTCCAT
                      ____________________________________________________________
consensus AGAAAATATAAGTGGTCATATAGGGAAGACTACCACCAAGGAGGAAGTAGAGTGTTCCAT
 
. : . : . : . : . : . :
rJMFF044E20+ TACTTTGGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
rJMSF024D17+ TACTTTGGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
rJMFF046C01+ GGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
                      ____________________________________________________________
consensus TACTTTGGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
 
. : . : . : . : . : . :
rJMFF044E20+ GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCT-T
rJMSF024D17+ GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCTGT
rJMFF046C01+ GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCTGT
                      ____________________________________________________________
consensus GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCTGT
 
. : . : . : . : . : . :
rJMFF044E20+ TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
rJMSF024D17+ TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
rJMFF046C01+ TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
                      ____________________________________________________________
consensus TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
 
. : . : . : . : . : . :
rJMFF044E20+ TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
rJMSF024D17+ TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
rJMFF046C01+ TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
                      ____________________________________________________________
consensus TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
 
. : . : . : . : . : . :
rJMFF044E20+ GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
rJMSF024D17+ GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
rJMFF046C01+ GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
                      ____________________________________________________________
consensus GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
 
. : . : . : . : . : . :
rJMFF044E20+ AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
rJMSF024D17+ AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
rJMFF046C01+ AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
                      ____________________________________________________________
consensus AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
 
. : . : . : . : . : . :
rJMFF044E20+ CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
rJMSF024D17+ CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
rJMFF046C01+ CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
                      ____________________________________________________________
consensus CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
 
. : . : . : . : . : . :
rJMFF044E20+ ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
rJMSF024D17+ ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
rJMFF046C01+ ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
                      ____________________________________________________________
consensus ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
 
. : . : . : . : . : . :
rJMFF044E20+ TCTTCCCCATACAATGATTGTACAGCCAAACAAA
rJMSF024D17+ TCTTCCCCATACAATGATTGTACAGCCAAACAAACAATAGGACTTGTGTTCTGTTTCTCT
rJMFF046C01+ TCTTCCCCATACAATGATTGTACAGCCAAACAAACAATAGGACTTGTGTTCTGTTTCTCT
                      ____________________________________________________________
consensus TCTTCCCCATACAATGATTGTACAGCCAAACAAACAATAGGACTTGTGTTCTGTTTCTCT
 
. : . : . : . : . : . :
rJMSF024D17+ CTCTCTCTCTCTTTCAT
rJMFF046C01+ CTCTCTCTCTCTTTCATTGAATCAGTATGCAATAGCACCATTTCTCACAAAAAAAAAAAG
                      ____________________________________________________________
consensus CTCTCTCTCTCTTTCATTGAATCAGTATGCAATAGCACCATTTCTCACAAAAAAAAAAAG