clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF007H07 | Sequence | 506 | 000379 (4) | gb:AY346458_1601036 | 6e-41 | Solanum chacoense MYST-type acetyltransferase mRNA, partial cds. | 707 | 010548 (4) | gb:AY346458_1601036 | 1e-86 | Solanum chacoense MYST-type acetyltransferase mRNA, partial cds. |
JMFF045I12 | Sequence | 635 | 000379 (4) | gb:AY346458_1601036 | 2e-57 | Solanum chacoense MYST-type acetyltransferase mRNA, partial cds. | 632 | 010548 (4) | gb:AY346458_1601036 | 2e-66 | Solanum chacoense MYST-type acetyltransferase mRNA, partial cds. |
JMSF037D20 | Sequence | 694 | 000379 (4) | gb:AY346458_1601036 | 1e-63 | Solanum chacoense MYST-type acetyltransferase mRNA, partial cds. | 750 | 010548 (4) | gb:AY346458_1601036 | e-103 | Solanum chacoense MYST-type acetyltransferase mRNA, partial cds. |
JMSF049E17 | Sequence | 664 | 010548 (4) | gb:AP004009_1836300 | 0.003 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ13 | 112 | 024355 | gb:AB010070_1510885 | 5e-07 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK20. |
This contig is upended
. : . : . : . : . : . :
JMSF049E17- GGGAGGACCAGCAGAGCAGACACTCTACTCCTCTTTCGCCTACTGCCTCCA
____________________________________________________________
consensus GGGAGGACCAGCAGAGCAGACACTCTACTCCTCTTTCGCCTACTGCCTCCA
. : . : . : . : . : . :
JMSF049E17- CGCCCCAGCCACCACTCCATCACTCCATTAGAACTCTTCATCGAATATTTGGAGATTCGC
____________________________________________________________
consensus CGCCCCAGCCACCACTCCATCACTCCATTAGAACTCTTCATCGAATATTTGGAGATTCGC
. : . : . : . : . : . :
JMSF049E17- GGCCCATTACTCCACACGCGCCTCCACCGACCACCGTTGTCCGGCTACTCTCCTCCATGG
____________________________________________________________
consensus GGCCCATTACTCCACACGCGCCTCCACCGACCACCGTTGTCCGGCTACTCTCCTCCATGG
. : . : . : . : . : . :
JMSF049E17- CTCCGTCCGTTCACGGTTCACCATTCGTCCATTCGTCCACCATTATAGATTTATAGCCTC
____________________________________________________________
consensus CTCCGTCCGTTCACGGTTCACCATTCGTCCATTCGTCCACCATTATAGATTTATAGCCTC
. : . : . : . : . : . :
JMSF049E17- CGGTAGTCAGGTTCGAACCAATCTTCATTATTCTTCAACTTGATTCTTTTAATTAGTTTG
____________________________________________________________
consensus CGGTAGTCAGGTTCGAACCAATCTTCATTATTCTTCAACTTGATTCTTTTAATTAGTTTG
. : . : . : . : . : . :
JMSF049E17- CCACTTTGCCCTAATGGCTAATTCCATAAAAATGATGATTGATAAATCCCTAATTCCCTA
____________________________________________________________
consensus CCACTTTGCCCTAATGGCTAATTCCATAAAAATGATGATTGATAAATCCCTAATTCCCTA
. : . : . : . : . : . :
JMSF049E17- AATTTTCAATTAGTTTGCCCTACTAATGTCTCCGTCCGTTCACCGTGAATGTGATGATCG
rJMSF037D20+ GTGAATGTGATGATCG
rJMFF007H07+ GATGATNG
____________________________________________________________
consensus AATTTTCAATTAGTTTGCCCTACTAATGTCTCCGTCCGTTCACCGTGAATGTGATGATCG
. : . : . : . : . : . :
JMSF049E17- AGGGTGCCATATGGTTGGCTATTTTTCTAAGG
rJMSF037D20+ AGGGTGCCATATGGTTGGCTATTTTTCTAAGGAAAAACATTCGGAAGAATCTTACAATTT
rJMFF007H07+ AGGGTGCCATATGGTTGGCTATTTTTCTAAGGAAAAACATTCGGAAGAATCTTACAATTT
____________________________________________________________
consensus AGGGTGCCATATGGTTGGCTATTTTTCTAAGGAAAAACATTCGGAAGAATCTTACAATTT
. : . : . : . : . : . :
rJMSF037D20+ GGCCTGTATCCTGACTCTTCCACCTTATCAGAGAAAAGGCTATGGGAAATTCCTAATTGC
rJMFF007H07+ GGCNTGTATCCTGACTCTTCCACCTTATCAGAGAAAAGGCTATGGGAAATTCCTAATTGC
rJMFF045I12+ TCAGAGAAAAGGCTATGGGAAATTCCTAATTGC
____________________________________________________________
consensus GGCCTGTATCCTGACTCTTCCACCTTATCAGAGAAAAGGCTATGGGAAATTCCTAATTGC
. : . : . : . : . : . :
rJMSF037D20+ ATTTTCATATGAACTTTCTAAGAAAGAAGGTAAAGTGGGCACTCCAGAAAGACCTCTTTC
rJMFF007H07+ ATTTTCATATGAACTTTCTAAGAAAGAAGGTAAAGTGGGCACTCCAGAAAGACCTCTTTC
rJMFF045I12+ ATTTTCATATGAACTTTCTAAGAAAGAAGGTAAAGTGGGCACTCCAGAAAGACCTCTTTC
____________________________________________________________
consensus ATTTTCATATGAACTTTCTAAGAAAGAAGGTAAAGTGGGCACTCCAGAAAGACCTCTTTC
. : . : . : . : . : . :
rJMSF037D20+ TGACTTAGGTATGCTAAGCTACCGGGGTTATTGGACTCGTGTTTTACTAGATATATTGAA
rJMFF007H07+ TGACTTAGGTATGCTAAGCTACCGGGGTTATTGGACTCGTGTTTTACTAGATATATTGAA
rJMFF045I12+ TGACTTAGGTATGCTAAGCTACCGGGGTTATTGGACTCGTGTTTTACTAGATATATTGAA
____________________________________________________________
consensus TGACTTAGGTATGCTAAGCTACCGGGGTTATTGGACTCGTGTTTTACTAGATATATTGAA
. : . : . : . : . : . :
rJMSF037D20+ AAAGCACAAGGGCAACATTTCTATCAAGGAGCTGAGTGATATGACTGCAATCAAGGCAGA
rJMFF007H07+ AAAGCACAAGGGCAACATTTCTATCAAGGAGCTGAGTGATATGACTGCAATCAAGGCAGA
rJMFF045I12+ AAAGCACAAGGGCAACATTTCTATCAAGGAGCTGAGTGATATGACTGCAATCAAGGCAGA
____________________________________________________________
consensus AAAGCACAAGGGCAACATTTCTATCAAGGAGCTGAGTGATATGACTGCAATCAAGGCAGA
. : . : . : . : . : . :
rJMSF037D20+ AGACATTCTAAGCACCCTTCAGGCCTTGGAGCTAATTCAGTACCGGAAAGGGCAACATGT
rJMFF007H07+ AGACATTCTAAGCACCCTTCAGGCCTTGGAGCTAATTCAGTACCGGAAAGGGCAACATGT
rJMFF045I12+ AGACATTCTAAGCACCCTTCAGGCCTTGGAGCTAATTCAGTACCGGAAAGGGCAACATGT
____________________________________________________________
consensus AGACATTCTAAGCACCCTTCAGGCCTTGGAGCTAATTCAGTACCGGAAAGGGCAACATGT
. : . : . : . : . : . :
rJMSF037D20+ CATCTGTGCTGATCCCAAGGTGTTGGATCGTCATCTAAAAGCTGCTGGCCGAGGTGGTCT
rJMFF007H07+ CATCTGTGCTGATCCCAAGGTGTTGGATCGTCATCTAAAAGCTGCTGGCCGAGGTGGTCT
rJMFF045I12+ CATCTGTGCTGATCCCAAGGTGTTGGATCGTCATCTAAAAGCTGCTGGCCGAGGTGGTCT
____________________________________________________________
consensus CATCTGTGCTGATCCCAAGGTGTTGGATCGTCATCTAAAAGCTGCTGGCCGAGGTGGTCT
. : . : . : . : . : . :
rJMSF037D20+ GGAAGTGGATGTTAGCAAATTGATATGGACTCCTTACAAGGAGCAAAGCTAATTTTAAAC
rJMFF007H07+ GGAAGTGGATGTTAGCAAATTGATATGGACTCCTTACAAGGAGCAAAGCTAATTTTAAAC
rJMFF045I12+ GGAAGTGGATGTTAGCAAATTGATATGGACTCCTTACAAGGAGCAAAGCTAATTTTAAAC
____________________________________________________________
consensus GGAAGTGGATGTTAGCAAATTGATATGGACTCCTTACAAGGAGCAAAGCTAATTTTAAAC
. : . : . : . : . : . :
rJMSF037D20+ TACCTTTCATCCTTTTACAGCTCCCTCTCTCCCTCCCTTGCCCACCAAGGTGGGATATGT
rJMFF007H07+ TACCTTTCATCCTTTTACAGCTCCCTCTCTCCCTCCCTTGCCCACCAAGGTGGGATATGT
rJMFF045I12+ TACCTTTCATCCTTTTACAGCTCCCTCTCTCCCTCCCTTGCCCACCAAGGTGGGATATGT
____________________________________________________________
consensus TACCTTTCATCCTTTTACAGCTCCCTCTCTCCCTCCCTTGCCCACCAAGGTGGGATATGT
. : . : . : . : . : . :
rJMSF037D20+ ACAAAAAATCCAGGTAATTAACATTTGGTCTTTACTCTTTAGGTCAACAACAATGGTAGG
rJMFF007H07+ ACAAAAAATCCAGGTAATTAACATTTGGTCTTTACTCTTTAGGTCAACAACAATGGTAGG
rJMFF045I12+ ACAAAAAATCCAGGTAATTAACATTTGGTCTTTACTCTTTAGGTCAACAACAATGGTAGG
____________________________________________________________
consensus ACAAAAAATCCAGGTAATTAACATTTGGTCTTTACTCTTTAGGTCAACAACAATGGTAGG
. : . : . : . : . : . :
rJMSF037D20+ TTTAACAGAATGCCAATGCCTTGTACCAAAGATATACCGCCGTGTACTGTATGTAATGCT
rJMFF007H07+ TTTAACAGAATGCCAATGCCTTGTACCAAAGATATA-CGCCGTGTACTGTATGTAATGCT
rJMFF045I12+ TTTAACAGAATGCCAATGCCTTGTACCAAAGATATA-CGCCGTGTACTGTATGTAATGCT
____________________________________________________________
consensus TTTAACAGAATGCCAATGCCTTGTACCAAAGATATA-CGCCGTGTACTGTATGTAATGCT
. : . : . : . : . : . :
rJMFF007H07+ TGACTATGGTATATATTCTGTTGAATGA
rJMFF045I12+ TGACTATGGTATATATTCTGTTGAATGAAAAAGAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TGACTATGGTATATATTCTGTTGAATGAAAAAGAAAAAAAAAAAAAAAACTCTCCAGGGT