| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004C10 | Sequence | 562 | 010484 (8) | gb:AY084973_1570055 | 3e-28 | Arabidopsis thaliana clone 123128 mRNA, complete sequence. | 770 | 010484 (8) | gb:AY367058_1602918 | 7e-77 | Pisum sativum cultivar Alaska SAT5 mRNA, complete cds. |
| JMFF014D20 | Sequence | 575 | 010484 (8) | gb:AY084973_1570055 | 1e-33 | Arabidopsis thaliana clone 123128 mRNA, complete sequence. | 698 | 010484 (8) | gb:AY367058_1602918 | 4e-79 | Pisum sativum cultivar Alaska SAT5 mRNA, complete cds. |
| JMFF044P19 | Sequence | 598 | 010484 (8) | gb:AY084973_1570055 | 8e-58 | Arabidopsis thaliana clone 123128 mRNA, complete sequence. | 605 | 010484 (8) | gb:AY367058_1602918 | 2e-60 | Pisum sativum cultivar Alaska SAT5 mRNA, complete cds. |
| JMSF048K18 | Sequence | 712 | 010484 (8) | gb:AY367058_1602918 | 7e-71 | Pisum sativum cultivar Alaska SAT5 mRNA, complete cds. | 741 | 010484 (8) | gb:AY367058_1602918 | 5e-84 | Pisum sativum cultivar Alaska SAT5 mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
JMFF004C10- ATCCCCGGACTTCTTCAATCCCCCTTTTGAATTTTTGGATC
JMFF044P19- GGATC
JMFF014D20- GAATTTTTGGATC
JMSF048K18- CCCCCTTTTGAATTTTTGGATC
____________________________________________________________
consensus ATCCCCGGACTTCTTCAATCCCCCTTTTGAATTTTTGGATC
. : . : . : . : . : . :
JMFF004C10- TGAATTTCATCGAATTTTGATCTCCATGGCGAGTTCTGAAGAATCGAGTCCTCTCCTGCC
JMFF044P19- TGAATTTCATCGAATTTTGATCTCCATGGCGAGTTCTGAAGAATCGAGTCCTCTCCTGCC
JMFF014D20- TGAATTTCATCGAATTTTGATCTCCATGGCGAGTTCTGAAGAATCGAGTCCTCTCCTGCC
JMSF048K18- TGAATTTCATCGAATTTTGATCTCCATGGCGAGTTCTGAAGAATCGAGTCCTCTCCTGCC
____________________________________________________________
consensus TGAATTTCATCGAATTTTGATCTCCATGGCGAGTTCTGAAGAATCGAGTCCTCTCCTGCC
. : . : . : . : . : . :
JMFF004C10- AAGGCAACAAGAAGCCCAGGCGAAAAATGAGAACAACTCATCGAACCAAGCCGCTCCGGC
JMFF044P19- AAGGCAACAAGAAGCCCAGGCGAAAAATGAGAACAACTCATCGAACCAAGCCGCTCCGGC
JMFF014D20- AAGGCAACAAGAAGCCCAGGCGAAAAATGAGAACAACTCATCGAACCAAGCCGCTCCGGC
JMSF048K18- AAGGCAACAAGAAGCCCAGGCGAAAAATGAGAACAACTCATCGAACCAAGCCGCTCCGGC
____________________________________________________________
consensus AAGGCAACAAGAAGCCCAGGCGAAAAATGAGAACAACTCATCGAACCAAGCCGCTCCGGC
. : . : . : . : . : . :
JMFF004C10- CGCCCCAGCTCCTCCGCCGGCTCCGGCGGACACGGTGAAGCCACCCCCGGCTGTTATTCC
JMFF044P19- CGCCCCAGCTCCTCCGCCGGCTCCGGCGGACACGGTGAAGCCACCCCCGGCTGTTATTCC
JMFF014D20- CGCCCCAGCTCCTCCGCCGGCTCCGGCGGACACGGTGAAGCCACCCCCGGCTGTTATTCC
JMSF048K18- CGCCCCAGCTCCTCCGCCGGCTCCGGCGGACACGGTGAAGCCACCCCCGGCTGTTATTCC
rJMSF048K18+ TCC
rJMFF004C10+ TATTCC
____________________________________________________________
consensus CGCCCCAGCTCCTCCGCCGGCTCCGGCGGACACGGTGAAGCCACCCCCGGCTGTTATTCC
. : . : . : . : . : . :
JMFF004C10- GATGGGGTGGACCGCCAATGGCCTGCCGTTGAGATACAGCGTGACGGGTGAGCCCGTCGC
JMFF044P19- GATGGGGTGGACCGCCAATGGCCTGCCGTTGAGATACAGCGTGACGGGTGAGCCCGTCGC
JMFF014D20- GGTGGGGTGGACCGCCAATGGCCTGCCGTTGAGATACAGCGTGACGGGTGAGCCCGTCGC
JMSF048K18- GATGGGGTGGACCGCCAATGGCCTGCCGTTGAGATACAGCGTGACGGGTGAGCCCGTCGC
rJMSF048K18+ GATGGGGTGGACCGCCAATGGCCTGCCGTTGAGATACAGCGTGACGGGTGAGCCCGTCGC
rJMFF004C10+ GATGGGGTGGACCGCCAATGNCCTGCCGTTGAGATACAGCGTGACGGGTGAGCCCGTCGC
____________________________________________________________
consensus GATGGGGTGGACCGCCAATGGCCTGCCGTTGAGATACAGCGTGACGGGTGAGCCCGTCGC
. : . : . : . : . : . :
JMFF004C10- GGCTAGGGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
JMFF044P19- GGCTAGGGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
JMFF014D20- GGCTAGGGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
JMSF048K18- GGCTAGGGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
rJMSF048K18+ GGCTAGGGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
rJMFF004C10+ GGCTAGGGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
rJMFF014D20+ GGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
____________________________________________________________
consensus GGCTAGGGCGCAGTGGGATTCCGGCCTCTGTGCTTGTCTGGGGAGGAATGATGAATTCTG
. : . : . : . : . : . :
JMFF004C10- CAGCAGTGATCTTGAAGTTTGTTTTGTTAGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
JMFF044P19- CAGCAGTGATCTTGAAGTTTG-TTTGTTAGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
JMFF014D20- CAGCAGTGATCTTGAAGTTTGTTTTGTTGGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
JMSF048K18- CAGCAGTGATCTTGAAGTTTG-TTTGTTAGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
rJMSF048K18+ CAGCAGTGATCTTGAAGTTTG-TTTGTTAGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
rJMFF004C10+ CAGCAGTGATCTTGAAGTTTG-TTTNTTAGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
rJMFF014D20+ CAGCAGTGATCTTGAAGTTTG-TTTGTTGGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
rJMFF044P19+ ACGGAA
____________________________________________________________
consensus CAGCAGTGATCTTGAAGTTTG-TTTGTTAGGAAGTTTGGCCCCTTGTGTGCTCTACGGAA
. : . : . : . : . : . :
JMFF004C10- CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
JMFF044P19- CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
JMFF014D20- CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
JMSF048K18- CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
rJMSF048K18+ CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
rJMFF004C10+ CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
rJMFF014D20+ CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
rJMFF044P19+ CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
____________________________________________________________
consensus CCAATGTTGAGAGAATTGGTTCTTCCCCGGGGGCTTTCGCCAATCACTGCTTGCCTTACA
. : . : . : . : . : . :
JMFF004C10- CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
JMFF044P19- CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
JMFF014D20- CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
JMSF048K18- CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
rJMSF048K18+ CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
rJMFF004C10+ CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
rJMFF014D20+ CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
rJMFF044P19+ CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
____________________________________________________________
consensus CTGGTTTATACCTGATCGGGAATTCGTTTTTTGGTTGGAATTGCCTGGCTCCCTGGTTCT
. : . : . : . : . : . :
JMFF004C10- CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTG
JMFF044P19- CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
JMFF014D20- CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
JMSF048K18- CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
rJMSF048K18+ CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
rJMFF004C10+ CTTATCCTAGCCGTACCGCCATTCNNCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
rJMFF014D20+ CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
rJMFF044P19+ CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
____________________________________________________________
consensus CTTATCCTAGCCGTACCGCCATTC-GCCGCAAGTTCAATTTGGAGGGGAGCTGCGAGGCG
. : . : . : . : . : . :
JMFF044P19- CTTACCAGATCATGTGGGTGTGGTGGGAGCTTTGTGGAAGATGATTTGCAACGCG
JMFF014D20- CTTACCAGATCATGTGGG
JMSF048K18- CTTACCAGATCATGTGGGTGTGGTGGGAGCTTTGTGGAAGATGATTTGCAACGCGAACAG
rJMSF048K18+ CTTACCAGATCATGTGGGTGTGGTGGGAGCTTTGTGGAAGATGATTTGCAACGCGAACAG
rJMFF004C10+ CTTACCAGATCATGTGGGTGTGGTGGGAGCTTTGTGGAAGATGATTTGCAACGCGAACAG
rJMFF014D20+ CTTACCAGATCATGTGGGTGTGGTGGGAGCTTTGTGGAAGATGATTTGCAACGCGAACAG
rJMFF044P19+ CTTACCAGATCATGTGGGTGTGGTGGGAGCTTTGTGGAAGATGATTTGCAACGCGAACAG
____________________________________________________________
consensus CTTACCAGATCATGTGGGTGTGGTGGGAGCTTTGTGGAAGATGATTTGCAACGCGAACAG
. : . : . : . : . : . :
JMSF048K18- TGTGAATCTGCTTGTGACTTGGGAACTCACGTCTTTTGCCACCTATGCGCCCTGTGTCAG
rJMSF048K18+ TGTGAATCTGCTTGTGACTTGGGAACTCACGTCTTTTGCCACCTATGCGCCCTGTGTCAG
rJMFF004C10+ TGTGAATCTGCTTGTGACTTGGGAACTCACGTCTTTTGCCACCTATGCGCCCTGTGTCAG
rJMFF014D20+ TGTGAATCTGCTTGTGACTTGGGAACTCACGTCTTTTGCCACCTATGCGCCCTGTGTCAG
rJMFF044P19+ TGTGAATCTGCTTGTGACTTGGGAACTCACGTCTTTTGCCACCTATGCGCCCTGTGTCAG
____________________________________________________________
consensus TGTGAATCTGCTTGTGACTTGGGAACTCACGTCTTTTGCCACCTATGCGCCCTGTGTCAG
. : . : . : . : . : . :
JMSF048K18- GAAGCTCGTGAAGTTCGTCGT
rJMSF048K18+ GAAGCTCGTGAAGTTCGTCGTAGGCTTCCCCATCCCGGGTTCAACGCCCAACCCGTCTTG
rJMFF004C10+ GAAGCTCGTGAAGTTCGTCGTAGGCTTCCCCATCCCGGGTTCAACGCCCAACCCGTCTTG
rJMFF014D20+ GAAGCTCGTGAAGTTCGTCGTAGGCTTCCCCATCCCGGGTTCAACGCCCAACCCGTCTTG
rJMFF044P19+ GAAGCTCGTGAAGTTCGTCGTAGGCTTCCCCATCCCGGGTTCAACGCCCAACCCGTCTTG
____________________________________________________________
consensus GAAGCTCGTGAAGTTCGTCGTAGGCTTCCCCATCCCGGGTTCAACGCCCAACCCGTCTTG
. : . : . : . : . : . :
rJMSF048K18+ GTCATGATCCCTCCCGGAGAACAGACAATGGGTCGCTAAGCGCAATGATTGTCCATTCAT
rJMFF004C10+ GTCATGATCCCTCCCGGAGAACAGACAATGGGTCGCTAAGCGCAATGATTGTCCATTCAT
rJMFF014D20+ GTCATGATCCCTCCCGGAGAACAGACAATGGGTCGCTAAGCGCAATGATTGTCCATTCAT
rJMFF044P19+ GTCATGATCCCTCCCGGAGAACAGACAATGGGTCGCTAAGCGCAATGATTGTCCATTCAT
____________________________________________________________
consensus GTCATGATCCCTCCCGGAGAACAGACAATGGGTCGCTAAGCGCAATGATTGTCCATTCAT
. : . : . : . : . : . :
rJMSF048K18+ AGATATGGTTCTGCATTACCTGATTGTTGTTCTTCTATTGCCAATTAAGCCTGCACTGAG
rJMFF004C10+ AGATATGGTTCTGCATTACCTGATTGTTGTTCTTCTATTGCCAATTAAGCCTGCACTGAG
rJMFF014D20+ AGATATGGTTCTGCATTACCTGATTGTTGTTCTTCTATTGCCAATTAAGCCTGCACTGAG
rJMFF044P19+ AGATATGGTTCTGCATTACCTGATTGTTGTTCTTCTATTGCCAATTAAGCCTGCACTGAG
____________________________________________________________
consensus AGATATGGTTCTGCATTACCTGATTGTTGTTCTTCTATTGCCAATTAAGCCTGCACTGAG
. : . : . : . : . : . :
rJMSF048K18+ TATACTTTCTTTGTCTTTTTAGATCATCATATTTATAAATAAGACATGTATCATTTTAGT
rJMFF004C10+ TATACTTTCTTTGTCTTTTTAGATCATCATATTTATAAATAAGACATGTATCATTTTAGT
rJMFF014D20+ TATACTTTCTTTGTCTTTTTAGATCATCATATTTATAAATAAGACATGTATCATTTTAGT
rJMFF044P19+ TATACTTTCTTTGTCTTTTTAGATCATCATATTTATAAATAAGACATGTATCATTTTAGT
____________________________________________________________
consensus TATACTTTCTTTGTCTTTTTAGATCATCATATTTATAAATAAGACATGTATCATTTTAGT
. : . : . : . : . : . :
rJMSF048K18+ ACCATATGGGTT
rJMFF004C10+ ACCATATGGGTTCAACGTATGAATTACACAAAGT
rJMFF014D20+ ACCATATGGGTTCAACGTATGAATTACACAAAG-TGGAA
rJMFF044P19+ ACCATATGGGTTCAACGTATGAATTACACAAAGTTGGAATAAAGAAGATTGTTTCTGTCC
____________________________________________________________
consensus ACCATATGGGTTCAACGTATGAATTACACAAAGTTGGAATAAAGAAGATTGTTTCTGTCC