clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF009H11 | Sequence | 561 | 001895 (4) | pir|T47873|T47873 | 9e-05 | phosphatidate cytidylyltransferase-like protein - Arabidopsis thaliana>gb:ATT4C2 | 783 | 010433 (4) | gb:AY050778_1562287 | 7e-68 | Arabidopsis thaliana putative phosphatidate cytidylyltransferase (At2g45150) mRN |
JMFF037P14 | Sequence | 528 | 001895 (4) | 234 | 010433 (4) | pir|T47873|T47873 | 4e-07 | phosphatidate cytidylyltransferase-like protein - Arabidopsis thaliana>gb:ATT4C2 | |||
JMFF044H12 | Sequence | 638 | 001895 (4) | pir|T47873|T47873 | 9e-16 | phosphatidate cytidylyltransferase-like protein - Arabidopsis thaliana>gb:ATT4C2 | 649 | 010433 (4) | gb:AY050778_1562287 | 9e-40 | Arabidopsis thaliana putative phosphatidate cytidylyltransferase (At2g45150) mRN |
JMSF012N14 | Sequence | 196 | 001895 (4) | 756 | 010433 (4) | gb:AY050778_1562287 | 7e-70 | Arabidopsis thaliana putative phosphatidate cytidylyltransferase (At2g45150) mRN |
This contig is upended
. : . : . : . : . : . :
rJMSF012N14+ CCCTGTTTCTGGGTTAAGTTGAGATGCAGTTTAGCAGTGCCAGCCCT
rJMFF009H11+ CTGGGTTAAGTTGAGATGCAGTTTAGCAGTGCCAGCCNT
____________________________________________________________
consensus CCCTGTTTCTGGGTTAAGTTGAGATGCAGTTTAGCAGTGCCAGCCCT
. : . : . : . : . : . :
rJMSF012N14+ ACATACACGAATAGCACAAGCCTGGCCAGTCTTATTAGGAGGCCAAACTCAATGGACGGT
rJMFF009H11+ ACATACACGAATAGCACAAGCCTGGCCAGTCTTATTAGGAGGCCAAACTCAATGGACGGT
____________________________________________________________
consensus ACATACACGAATAGCACAAGCCTGGCCAGTCTTATTAGGAGGCCAAACTCAATGGACGGT
. : . : . : . : . : . :
rJMSF012N14+ GGGTCTTGTGGCATCCTTGATTTCTATTAGTAGTATCATTGCAGCAGACACATATGCTTT
rJMFF009H11+ GGGTCTTGTGGCATCCTTGATTTCTATTAGTAGTATCATTGCAGCAGACACATATGCTTT
____________________________________________________________
consensus GGGTCTTGTGGCATCCTTGATTTCTATTAGTAGTATCATTGCAGCAGACACATATGCTTT
. : . : . : . : . : . :
rJMSF012N14+ TTTCGGCGGGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
rJMFF009H11+ TTTCGGCGGGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
rJMFF044H12+ GGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
____________________________________________________________
consensus TTTCGGCGGGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
. : . : . : . : . : . :
rJMSF012N14+ GGAGGGAGCTCTGGCAGGTATTGGTGGTTGTATAGCCACTACTGTGGTATTGTCAAAGTT
rJMFF009H11+ GGAGGGAGCTCTGGCAGGTATTGGTGGTTGTATAGCCACTACTGTGGTATTGTCAAAGTT
rJMFF044H12+ GGAGGGAGCTCTGGCAGGTATTGGTGGTNGTATAGCCACTACTGTGGTATTGTCAAAGTT
____________________________________________________________
consensus GGAGGGAGCTCTGGCAGGTATTGGTGGTTGTATAGCCACTACTGTGGTATTGTCAAAGTT
. : . : . : . : . : . :
rJMSF012N14+ ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTTGGAGTTTTGATCTTCTTTGG
rJMFF009H11+ ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTTGGAGTTTTGATCTTCTTTGG
rJMFF044H12+ ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTNGGAGTTTTGATCTTCTTTGG
____________________________________________________________
consensus ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTTGGAGTTTTGATCTTCTTTGG
. : . : . : . : . : . :
rJMSF012N14+ ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
rJMFF009H11+ ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
rJMFF044H12+ ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
____________________________________________________________
consensus ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
. : . : . : . : . : . :
rJMFF037P14+ GGGATCTCTCATCCCNGGACATGGNGGGGTACTGGACAGANTTNATAGCTACATATTCAC
rJMSF012N14+ GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
rJMFF009H11+ GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
rJMFF044H12+ GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
____________________________________________________________
consensus GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
. : . : . : . : . : . :
rJMFF037P14+ AGGCGCCCTCGCNTATTCCNNNGTGAAAANGTTCGGTGCCCCTCTATGGCGTTTAATGAA
rJMSF012N14+ AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
rJMFF009H11+ AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
rJMFF044H12+ AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
____________________________________________________________
consensus AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
. : . : . : . : . : . :
rJMFF037P14+ GCATCGAACCATACTCTTGGAAGGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
rJMSF012N14+ GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
rJMFF009H11+ GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
rJMFF044H12+ GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
____________________________________________________________
consensus GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
. : . : . : . : . : . :
rJMFF037P14+ ATTAGCACCGAANATNGAGGTTTCTTNTGC-AAAAAACGCAAAAAGAATGA
rJMSF012N14+ ATTAGCACCGAATTTCGAGGTTTCTTCTGC-AAAAAACGCAAAAAGAATGATGTTTTTTG
rJMFF009H11+ ATTAGCACCGAATTTCGAGGTTTCTTCTGCAAAAAAACGCAAAAAGAATGATGTTTTTTG
rJMFF044H12+ ATTAGCACCGAATTTCGAGGTTTCTTCTGCAAAAAAACGCAAAAAGAATGATGTTTTTTG
____________________________________________________________
consensus ATTAGCACCGAATTTCGAGGTTTCTTCTGCAAAAAAACGCAAAAAGAATGATGTTTTTTG
. : . : . : . : . : . :
rJMSF012N14+ CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
rJMFF009H11+ CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
rJMFF044H12+ CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
____________________________________________________________
consensus CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
. : . : . : . : . : . :
rJMSF012N14+ TGTCTTTTCGCTTGCAATGCGACGATTCTGTTGTGTACAGGTGAGAGAGAT
rJMFF009H11+ TGTCTTTTCGCTTGCAATGCGACGA-TCTGTTGTGTACAGGTGAGAGAGATGCGAGAATT
rJMFF044H12+ TGTCTTTTCGCTTGCAATGCGACGA-TCTGTTGTGTACAGGTGAGAGAGATGC-AGAATT
____________________________________________________________
consensus TGTCTTTTCGCTTGCAATGCGACGA-TCTGTTGTGTACAGGTGAGAGAGATGCGAGAATT
. : . : . : . : . : . :
rJMFF009H11+ CTNTAACTTA-TTTCTTCGTTCGAAAA
rJMFF044H12+ CTTTAACTTATTTTCTTCGTTCGAAAATCTGTACAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus CTTTAACTTATTTTCTTCGTTCGAAAATCTGTACAAAAAAAAAAAAAAACTCTCCAGGGT