Previous Contig 010433:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009H11Sequence561001895 (4)pir|T47873|T478739e-05phosphatidate cytidylyltransferase-like protein - Arabidopsis thaliana>gb:ATT4C2783010433 (4)gb:AY050778_15622877e-68Arabidopsis thaliana putative phosphatidate cytidylyltransferase (At2g45150) mRN
JMFF037P14Sequence528001895 (4)234010433 (4)pir|T47873|T478734e-07phosphatidate cytidylyltransferase-like protein - Arabidopsis thaliana>gb:ATT4C2
JMFF044H12Sequence638001895 (4)pir|T47873|T478739e-16phosphatidate cytidylyltransferase-like protein - Arabidopsis thaliana>gb:ATT4C2649010433 (4)gb:AY050778_15622879e-40Arabidopsis thaliana putative phosphatidate cytidylyltransferase (At2g45150) mRN
JMSF012N14Sequence196001895 (4)756010433 (4)gb:AY050778_15622877e-70Arabidopsis thaliana putative phosphatidate cytidylyltransferase (At2g45150) mRN

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+                       CCCTGTTTCTGGGTTAAGTTGAGATGCAGTTTAGCAGTGCCAGCCCT
rJMFF009H11+                               CTGGGTTAAGTTGAGATGCAGTTTAGCAGTGCCAGCCNT
                      ____________________________________________________________
consensus                          CCCTGTTTCTGGGTTAAGTTGAGATGCAGTTTAGCAGTGCCAGCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          ACATACACGAATAGCACAAGCCTGGCCAGTCTTATTAGGAGGCCAAACTCAATGGACGGT
rJMFF009H11+          ACATACACGAATAGCACAAGCCTGGCCAGTCTTATTAGGAGGCCAAACTCAATGGACGGT
                      ____________________________________________________________
consensus             ACATACACGAATAGCACAAGCCTGGCCAGTCTTATTAGGAGGCCAAACTCAATGGACGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          GGGTCTTGTGGCATCCTTGATTTCTATTAGTAGTATCATTGCAGCAGACACATATGCTTT
rJMFF009H11+          GGGTCTTGTGGCATCCTTGATTTCTATTAGTAGTATCATTGCAGCAGACACATATGCTTT
                      ____________________________________________________________
consensus             GGGTCTTGTGGCATCCTTGATTTCTATTAGTAGTATCATTGCAGCAGACACATATGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          TTTCGGCGGGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
rJMFF009H11+          TTTCGGCGGGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
rJMFF044H12+                  GGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
                      ____________________________________________________________
consensus             TTTCGGCGGGAAGGTTTTTGGTAGGACACCGCTTACTGATATTAGTCCAAAGAAGACTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          GGAGGGAGCTCTGGCAGGTATTGGTGGTTGTATAGCCACTACTGTGGTATTGTCAAAGTT
rJMFF009H11+          GGAGGGAGCTCTGGCAGGTATTGGTGGTTGTATAGCCACTACTGTGGTATTGTCAAAGTT
rJMFF044H12+          GGAGGGAGCTCTGGCAGGTATTGGTGGTNGTATAGCCACTACTGTGGTATTGTCAAAGTT
                      ____________________________________________________________
consensus             GGAGGGAGCTCTGGCAGGTATTGGTGGTTGTATAGCCACTACTGTGGTATTGTCAAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTTGGAGTTTTGATCTTCTTTGG
rJMFF009H11+          ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTTGGAGTTTTGATCTTCTTTGG
rJMFF044H12+          ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTNGGAGTTTTGATCTTCTTTGG
                      ____________________________________________________________
consensus             ACTGAGCTGGCCTAGATCTATGCTAAGTGCTGTAGCTTTTGGAGTTTTGATCTTCTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
rJMFF009H11+          ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
rJMFF044H12+          ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
                      ____________________________________________________________
consensus             ATCACTTTTTGGTGACCTCACCGAGTCCATGATCAAACGCGATGCTGGTGTGAAAGACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037P14+          GGGATCTCTCATCCCNGGACATGGNGGGGTACTGGACAGANTTNATAGCTACATATTCAC
rJMSF012N14+          GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
rJMFF009H11+          GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
rJMFF044H12+          GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
                      ____________________________________________________________
consensus             GGGATCTCTCATCCCTGGACATGGTGGGGTACTGGACAGAGTTGATAGCTACATATTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037P14+          AGGCGCCCTCGCNTATTCCNNNGTGAAAANGTTCGGTGCCCCTCTATGGCGTTTAATGAA
rJMSF012N14+          AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
rJMFF009H11+          AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
rJMFF044H12+          AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
                      ____________________________________________________________
consensus             AGGCGCCCTCGCCTATTCCTTTGTGAAAATGTTC-CTGCCCCTCTATGGCGTTTAATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037P14+          GCATCGAACCATACTCTTGGAAGGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
rJMSF012N14+          GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
rJMFF009H11+          GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
rJMFF044H12+          GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
                      ____________________________________________________________
consensus             GCATCGAACCATACTCTTGGAAAGACACGCCCACCAATTTCTAGACACTGCATTCGGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037P14+          ATTAGCACCGAANATNGAGGTTTCTTNTGC-AAAAAACGCAAAAAGAATGA         
rJMSF012N14+          ATTAGCACCGAATTTCGAGGTTTCTTCTGC-AAAAAACGCAAAAAGAATGATGTTTTTTG
rJMFF009H11+          ATTAGCACCGAATTTCGAGGTTTCTTCTGCAAAAAAACGCAAAAAGAATGATGTTTTTTG
rJMFF044H12+          ATTAGCACCGAATTTCGAGGTTTCTTCTGCAAAAAAACGCAAAAAGAATGATGTTTTTTG
                      ____________________________________________________________
consensus             ATTAGCACCGAATTTCGAGGTTTCTTCTGCAAAAAAACGCAAAAAGAATGATGTTTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
rJMFF009H11+          CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
rJMFF044H12+          CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
                      ____________________________________________________________
consensus             CCAAGAGGAAACAGCGGGATAGGTTTATGAACTGATGTTCAGAGGTGCGTTGAGGTTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012N14+          TGTCTTTTCGCTTGCAATGCGACGATTCTGTTGTGTACAGGTGAGAGAGAT         
rJMFF009H11+          TGTCTTTTCGCTTGCAATGCGACGA-TCTGTTGTGTACAGGTGAGAGAGATGCGAGAATT
rJMFF044H12+          TGTCTTTTCGCTTGCAATGCGACGA-TCTGTTGTGTACAGGTGAGAGAGATGC-AGAATT
                      ____________________________________________________________
consensus             TGTCTTTTCGCTTGCAATGCGACGA-TCTGTTGTGTACAGGTGAGAGAGATGCGAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF009H11+          CTNTAACTTA-TTTCTTCGTTCGAAAA                                 
rJMFF044H12+          CTTTAACTTATTTTCTTCGTTCGAAAATCTGTACAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             CTTTAACTTATTTTCTTCGTTCGAAAATCTGTACAAAAAAAAAAAAAAACTCTCCAGGGT