| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043I18 | Sequence | 640 | 010323 (6) | gb:ATAC009853_1543048 | 3e-73 | Arabidopsis thaliana chromosome III BAC F21O3 genomic sequence, complete sequenc | 483 | 010323 (6) | gb:CAR275312_1645197 | 4e-17 | Cicer arietinum partial mRNA for RAS-like protein. |
| JMSF006E17 | Sequence | 466 | 004792 (2) | 364 | 010323 (6) | gb:CAR275312_1645197 | 4e-13 | Cicer arietinum partial mRNA for RAS-like protein. | |||
| JMSF006G19 | Sequence | 418 | 010323 (6) | gb:BT006190_1639082 | 6e-40 | Arabidopsis thaliana clone C00163 (i) putative RAS-related protein ARA-1 (At1g05 | |||||
| JMSF013D04 | Sequence | 347 | 010323 (6) | pir|T06443|T06443 | 1e-29 | GTP-binding protein - garden pea>gb:PEAGTPBP01_1699683 Pisum sativum mRNA for GT | 748 | 010323 (6) | gb:ATAC009853_1543048 | 4e-82 | Arabidopsis thaliana chromosome III BAC F21O3 genomic sequence, complete sequenc |
This contig is upended
. : . : . : . : . : . :
JMSF006G19- GCGA
____________________________________________________________
consensus GCGA
. : . : . : . : . : . :
JMSF013D04- GATTCTTTTCCTTACAGATAAAGATTACGGGCTGCTGCGTTTACTCTCTCTGT
JMSF006G19- AATCTTTGATTCTTTTCCTTACAGATAAAGATTACGGGCTGCTGCGTTTACTCTCTCTGT
JMFF043I18- GT
____________________________________________________________
consensus AATCTTTGATTCTTTTCCTTACAGATAAAGATTACGGGCTGCTGCGTTTACTCTCTCTGT
. : . : . : . : . : . :
JMSF013D04- AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
JMSF006G19- AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
JMFF043I18- AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
rJMSF013D04+ AGAGAGAGAGAGAGAGAGGGAATG
____________________________________________________________
consensus AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
. : . : . : . : . : . :
JMSF013D04- GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
JMSF006G19- GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
JMFF043I18- GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
rJMSF013D04+ GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
____________________________________________________________
consensus GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
. : . : . : . : . : . :
JMSF013D04- GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
JMSF006G19- GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
JMFF043I18- GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
rJMSF013D04+ GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
____________________________________________________________
consensus GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
. : . : . : . : . : . :
JMSF013D04- ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
JMSF006G19- ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
JMFF043I18- ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
rJMSF013D04+ ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
____________________________________________________________
consensus ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
. : . : . : . : . : . :
JMSF013D04- CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTA
JMSF006G19- CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
JMFF043I18- CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
rJMSF013D04+ CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
____________________________________________________________
consensus CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
. : . : . : . : . : . :
JMSF006G19- GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAG
JMFF043I18- GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAGAACATC
rJMSF013D04+ GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAGAACATC
____________________________________________________________
consensus GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAGAACATC
. : . : . : . : . : . :
JMFF043I18- AAACGCTGGCTCGAAGAGCTCAACACTCATTGTGATACTACGGTGGCAAGGATGCTGGTT
rJMSF013D04+ AAACGCTGGCTCGAAGAGCTCAACACTCATTGTGATACTACGGTGGCAAGGATGCTGGTT
____________________________________________________________
consensus AAACGCTGGCTCGAAGAGCTCAACACTCATTGTGATACTACGGTGGCAAGGATGCTGGTT
. : . : . : . : . : . :
JMFF043I18- GGAAACAAGTGCGATTTGGAGAGCATTCGGGATGTGAGCGTGGAAGAGGGCAAGCTCCTT
rJMSF013D04+ GGAAACAAGTGCGATTTGGAGAGCATTCGGGATGTGAGCGTGGAAGAGGGCAAGCTCCTT
rJMFF043I18+ CCTT
____________________________________________________________
consensus GGAAACAAGTGCGATTTGGAGAGCATTCGGGATGTGAGCGTGGAAGAGGGCAAGCTCCTT
. : . : . : . : . : . :
JMFF043I18- GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
rJMSF013D04+ GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
rJMSF006E17+ AACGTCAAC
rJMFF043I18+ GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
____________________________________________________________
consensus GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
. : . : . : . : . : . :
JMFF043I18- ACCGCC-TTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTNCAC
rJMSF013D04+ ACCGCCTTTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTCAAC
rJMSF006E17+ ACCGCCTTTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTCAAC
rJMFF043I18+ ACCGCC-TTGAGATTGTCATTCGCGACATTTACAAGAACGTTAGCAGGAAGCTGCTCAAC
____________________________________________________________
consensus ACCGCC-TTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTCAAC
. : . : . : . : . : . :
JMFF043I18- TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTT
rJMSF013D04+ TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
rJMSF006E17+ TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
rJMFF043I18+ TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
____________________________________________________________
consensus TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
. : . : . : . : . : . :
rJMSF013D04+ ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
rJMSF006E17+ ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
rJMFF043I18+ ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
____________________________________________________________
consensus ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
. : . : . : . : . : . :
rJMSF013D04+ TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
rJMSF006E17+ TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
rJMFF043I18+ TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
____________________________________________________________
consensus TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
. : . : . : . : . : . :
rJMSF006E17+ TGATGAATTAGGGCAATGAGGGTCTCTGAGGTTGCCTTATGGAATGGCATATNTATTGTA
rJMFF043I18+ TGATGAATTAGGGCAATGAGGGTCTCTGAGGTTGCCTTATGGAATGGCATATTTATTGTA
____________________________________________________________
consensus TGATGAATTAGGGCAATGAGGGTCTCTGAGGTTGCCTTATGGAATGGCATATTTATTGTA
. : . : . : . : . : . :
rJMSF006E17+ TGTTTCTTGGTCAGGCCAGTGAAGTTTCAAAGATGCAGCAGAACAAGTTAACATG
rJMFF043I18+ TGTTTCTTGGTCAGGCCAGTGAAGTTTCAAAGATGCAGCAGAACAAGTTAACATGCACTC
____________________________________________________________
consensus TGTTTCTTGGTCAGGCCAGTGAAGTTTCAAAGATGCAGCAGAACAAGTTAACATGCACTC
. : . : . : . : . : . :
rJMFF043I18+ TGCAGTGTTCTTGTTTATTTGGAGTTGGTATGTGAATTTCTTGGTGATATTGTCCGCTCT
____________________________________________________________
consensus TGCAGTGTTCTTGTTTATTTGGAGTTGGTATGTGAATTTCTTGGTGATATTGTCCGCTCT