clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF042M23 | Sequence | 655 | 014943 | gb:AP003274_1826988 | 2e-36 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P051 | 618 | 010253 (2) | gb:AC130604_1740815 | 9e-26 | Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete seq |
JMFN005M19 | Sequence | 624 | 010253 (2) | gb:AY072140_1567033 | 5e-64 | Arabidopsis thaliana unknown protein (At1g55900) mRNA, complete cds.>gb:AY122975 |
This contig is upended
. : . : . : . : . : . :
JMFN005M19- CGTGACAGAGGCTGGA
____________________________________________________________
consensus CGTGACAGAGGCTGGA
. : . : . : . : . : . :
JMFN005M19- GGACTTTCAAGAGACCTGGAGTTGATGCTTTCCTGGAACATTTAGCTCAGTTTTTTGAGA
____________________________________________________________
consensus GGACTTTCAAGAGACCTGGAGTTGATGCTTTCCTGGAACATTTAGCTCAGTTTTTTGAGA
. : . : . : . : . : . :
JMFN005M19- TTGTTGTATACTCTGATCAGCAGAGCATGTATGTTGATCCTGTTGTCGAAAGATTGGATC
____________________________________________________________
consensus TTGTTGTATACTCTGATCAGCAGAGCATGTATGTTGATCCTGTTGTCGAAAGATTGGATC
. : . : . : . : . : . :
JMFN005M19- CAAAGAACTGTATCCGGTATAGGCTATCAAGAGGTGCAACTAAATATCTCAATGGCAAGC
____________________________________________________________
consensus CAAAGAACTGTATCCGGTATAGGCTATCAAGAGGTGCAACTAAATATCTCAATGGCAAGC
. : . : . : . : . : . :
JMFN005M19- ATTATAGAGATCTTTCAATGCTGAACAGAGATCCCTCAAAGGTTATATATATCAGTGGTC
rJMFF042M23+ TTATATATATCAGTGGTC
____________________________________________________________
consensus ATTATAGAGATCTTTCAATGCTGAACAGAGATCCCTCAAAGGTTATATATATCAGTGGTC
. : . : . : . : . : . :
JMFN005M19- ATGCACTTGAAAGCAGCCTTCAACCAGAAAATTGTTTGGAAATCAAACCATGGACAGGAG
rJMFF042M23+ ATGCACTTGAAAGCAGCCTTCAACCAGAAAATTGTTTGGAAATCAAACCATGGACAGGAG
____________________________________________________________
consensus ATGCACTTGAAAGCAGCCTTCAACCAGAAAATTGTTTGGAAATCAAACCATGGACAGGAG
. : . : . : . : . : . :
JMFN005M19- AATCTGAAGATACAGCACTTTTGGATCTTATTCCATTTCTTGAATATGTTGGCAAGCATA
rJMFF042M23+ AATCTGAAGATACAGCACTTTTGGATCTTATTCCATTTCTTGAATATGTTGGCAAGCATA
____________________________________________________________
consensus AATCTGAAGATACAGCACTTTTGGATCTTATTCCATTTCTTGAATATGTTGGCAAGCATA
. : . : . : . : . : . :
JMFN005M19- GGCCAGGTGATATACGAGCTGTTTTATCTTCATACGAAGGGCGTGATGTTGCCAAGGAGT
rJMFF042M23+ GGCCAGGTGATATACGAGCTGTTTTATCTTCATACGAAGGGCGTGATGTTTCCAAGGAGT
____________________________________________________________
consensus GGCCAGGTGATATACGAGCTGTTTTATCTTCATACGAAGGGCGTGATGTTTCCAAGGAGT
. : . : . : . : . : . :
JMFN005M19- TCATTGAACGGTCTAAGGAGCATCAGAGGCGAATGCAAGAGCAAAAGCAGCAGGGTCGTA
rJMFF042M23+ TCATTGAACGGTCTAAGGAGCATCAGAGGCGAATGCAAGAGCAAAAGCAGCAGGGTCGTA
____________________________________________________________
consensus TCATTGAACGGTCTAAGGAGCATCAGAGGCGAATGCAAGAGCAAAAGCAGCAGGGTCGTA
. : . : . : . : . : . :
JMFN005M19- TCTGGCGCCGCTAGATACAAGGATTGGCTAACTGTAGGATTGTATACTTGTTCGAGACAA
rJMFF042M23+ TCTGGCGCCGCTAGATACAAGGATTGGCTAACTGTAGGATTGTATACTTGTTCGAGACAA
____________________________________________________________
consensus TCTGGCGCCGCTAGATACAAGGATTGGCTAACTGTAGGATTGTATACTTGTTCGAGACAA
. : . : . : . : . : . :
JMFN005M19- TGAACAACAACAACTATTACTACTGTGAAGTAGTAGCAACCAATTTTGTGTAGTTAATAA
rJMFF042M23+ TGAACAACAACAACTATTACTACTGTGAAGTAGTAGCAACCAATTTTGTGTAGTTAATAA
____________________________________________________________
consensus TGAACAACAACAACTATTACTACTGTGAAGTAGTAGCAACCAATTTTGTGTAGTTAATAA
. : . : . : . : . : . :
JMFN005M19- TTCCATCC
rJMFF042M23+ TTCCATCCTTGTTTGGAGATGACCCTTTTTCAACTCCAGCCTACTGCACTCTTCCATTAA
____________________________________________________________
consensus TTCCATCCTTGTTTGGAGATGACCCTTTTTCAACTCCAGCCTACTGCACTCTTCCATTAA
. : . : . : . : . : . :
rJMFF042M23+ ATATCTTTACCCTAGCTTAAATCAACTTCATGTTTAACCCCATATTATTATGAGTCACAC
____________________________________________________________
consensus ATATCTTTACCCTAGCTTAAATCAACTTCATGTTTAACCCCATATTATTATGAGTCACAC
. : . : . : . : . : . :
rJMFF042M23+ TTGTGTGAGATATGTGAGAGAGGTTAGACCTAAGATAATTGTTTGTTACTTATGATAAAA
____________________________________________________________
consensus TTGTGTGAGATATGTGAGAGAGGTTAGACCTAAGATAATTGTTTGTTACTTATGATAAAA
. : . : . : . : . : . :
rJMFF042M23+ ATCATAATATTTATTGCAGAAAATTTAATATTAATTTGAAATAAATAAATTGTTACTTAT
____________________________________________________________
consensus ATCATAATATTTATTGCAGAAAATTTAATATTAATTTGAAATAAATAAATTGTTACTTAT