Previous Contig 010216:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022A01Sequence383003096 (2)pir|F96806|F968069e-20probable AUX1-like permease, 10674-8589 [imported] - Arabidopsis thaliana>gb:AE0734010216 (3)gb:AY115842_15789326e-68Medicago truncatula auxin influx carrier protein (LAX3) gene, complete cds.>gb:M
JMFF042G05Sequence659014931pir|E84596|E84596e-122AUX1-like amino acid permease [imported] - Arabidopsis thaliana>gb:AC006264_1533621010216 (3)gb:AY115842_15789322e-41Medicago truncatula auxin influx carrier protein (LAX3) gene, complete cds.>gb:M
JMFN033O21Sequence607010216 (3)gb:AY115842_15789323e-46Medicago truncatula auxin influx carrier protein (LAX3) gene, complete cds.>gb:M

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF022A01+ TTTAGAGACACTGCTGTCGTCCTCATGCTTATTCATCAGTT
                      ____________________________________________________________
consensus TTTAGAGACACTGCTGTCGTCCTCATGCTTATTCATCAGTT
 
. : . : . : . : . : . :
rJMFF022A01+ CATTACGTTTGGATTTGCTTGCACCCCTTTGTATTTTGTGTGGGAGAAGTTCATCGGAGT
                      ____________________________________________________________
consensus CATTACGTTTGGATTTGCTTGCACCCCTTTGTATTTTGTGTGGGAGAAGTTCATCGGAGT
 
. : . : . : . : . : . :
JMFN033O21- CAACACTAAGAGTCTGTTCAAGCGTGCATTGGCGAGGCTCCCAGTGGTGATACCAAT
rJMFF022A01+ ACACAACACTAAGAGTCTGTTCAAGCGTGCATTGGCGAGGCTCCCAGTGGTGATACCAAT
rJMFF042G05+ GCTCCCAGTGGTGATACCAAT
                      ____________________________________________________________
consensus ACACAACACTAAGAGTCTGTTCAAGCGTGCATTGGCGAGGCTCCCAGTGGTGATACCAAT
 
. : . : . : . : . : . :
JMFN033O21- CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
rJMFF022A01+ CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
rJMFF042G05+ CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
                      ____________________________________________________________
consensus CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
 
. : . : . : . : . : . :
JMFN033O21- TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
rJMFF022A01+ TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
rJMFF042G05+ TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
                      ____________________________________________________________
consensus TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
 
. : . : . : . : . : . :
JMFN033O21- TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
rJMFF022A01+ TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
rJMFF042G05+ TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
                      ____________________________________________________________
consensus TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
 
. : . : . : . : . : . :
JMFN033O21- GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
rJMFF022A01+ GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
rJMFF042G05+ GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
                      ____________________________________________________________
consensus GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
 
. : . : . : . : . : . :
JMFN033O21- AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
rJMFF022A01+ AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
rJMFF042G05+ AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
                      ____________________________________________________________
consensus AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
 
. : . : . : . : . : . :
JMFN033O21- GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
rJMFF022A01+ GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
rJMFF042G05+ GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
                      ____________________________________________________________
consensus GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
 
. : . : . : . : . : . :
JMFN033O21- ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
rJMFF022A01+ ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
rJMFF042G05+ ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
                      ____________________________________________________________
consensus ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
 
. : . : . : . : . : . :
JMFN033O21- ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
rJMFF022A01+ ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
rJMFF042G05+ ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
                      ____________________________________________________________
consensus ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
 
. : . : . : . : . : . :
JMFN033O21- TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
rJMFF022A01+ TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
rJMFF042G05+ TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
                      ____________________________________________________________
consensus TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
 
. : . : . : . : . : . :
JMFN033O21- AAATGTAACT
rJMFF022A01+ AAATGTAACTCCATTTGTTTTTGTGGAGTTTTA
rJMFF042G05+ AAATGTAACTCCATTTGTTTTTGTGGAGTTTTATTAATGATATTCGTCGGTCTTGCATAT
                      ____________________________________________________________
consensus AAATGTAACTCCATTTGTTTTTGTGGAGTTTTATTAATGATATTCGTCGGTCTTGCATAT