| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041P09 | Sequence | 659 | 001787 (5) | gb:BT015052_1642022 | 2e-09 | Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops | 614 | 010181 (5) | gb:BT015052_1642022 | 2e-22 | Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops |
| JMFF048L15 | Sequence | 398 | 001787 (5) | 338 | 010181 (5) | ||||||
| JMSF001N05 | Sequence | 419 | 001787 (5) | gb:BT015052_1642022 | 1e-04 | Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops | 677 | 010181 (5) | pir|T01251|T01251 | 1e-26 | hypothetical protein At2g38190 [imported] - Arabidopsis thaliana>gb:AC003028_153 |
| JMSF019E11 | Sequence | 506 | 001787 (5) | gb:BT015052_1642022 | 4e-07 | Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops | 774 | 010181 (5) | pir|T01251|T01251 | 2e-26 | hypothetical protein At2g38190 [imported] - Arabidopsis thaliana>gb:AC003028_153 |
| JMSF035L16 | Sequence | 654 | 001787 (5) | gb:BT015052_1642022 | 8e-17 | Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops | 310 | 010181 (5) | |||
This contig is upended
. : . : . : . : . : . :
rJMSF019E11+ CACATACTTT
____________________________________________________________
consensus CACATACTTT
. : . : . : . : . : . :
rJMSF001N05+ TTGTGTTCCTGGCCCAGCGTATCCTAAATAATCTG
rJMSF019E11+ CTTGGCATAGGNGGAACGTGTTTTTTTGTGTTCCTGGCCCAGCGTATCCTAAATAATNTG
____________________________________________________________
consensus CTTGGCATAGGNGGAACGTGTTTTTTTGTGTTCCTGGCCCAGCGTATCCTAAATAATCTG
. : . : . : . : . : . :
rJMSF001N05+ CATCGTAGAGCACAATTAGAAGATACTGGATCTGAACGGGTCCCTATGCTTTCGGACAAA
rJMSF019E11+ CATCGTAGAGCACAATTAGAAGATACTGGATCTGAACGGGTCCCTATGCTTTCGGACAAA
____________________________________________________________
consensus CATCGTAGAGCACAATTAGAAGATACTGGATCTGAACGGGTCCCTATGCTTTCGGACAAA
. : . : . : . : . : . :
rJMSF001N05+ CAAGATGACAACTTGAGTTTGGGTTCTTCTTACTGTTCTCTTTCTCAAGATGATGAGGAT
rJMSF019E11+ CAAGATGACAACTTGAGTTTGGGTTCTTCTTACTGTTCTCTTTCTCAAGATGATGAGGAT
rJMFF041P09+ TTCTCAAGATGATGAGGAT
____________________________________________________________
consensus CAAGATGACAACTTGAGTTTGGGTTCTTCTTACTGTTCTCTTTCTCAAGATGATGAGGAT
. : . : . : . : . : . :
rJMSF001N05+ GCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCAGTAAAAGACAGTGAGCAG
rJMSF019E11+ GCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCNGTAAAAGACAGTGAGCAG
rJMFF041P09+ GCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCAGTAAAAGACAGTGAGCAG
____________________________________________________________
consensus GCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCAGTAAAAGACAGTGAGCAG
. : . : . : . : . : . :
rJMSF001N05+ AGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTNTTCCTC
rJMSF019E11+ AGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTNTTCCTC
rJMFF041P09+ AGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTCTTCCTC
____________________________________________________________
consensus AGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTCTTCCTC
. : . : . : . : . : . :
rJMSF001N05+ CCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTGGT
rJMSF019E11+ CCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTGGT
rJMSF035L16+ CTGCTTGTCCNGTTTTGAATGNGGAACCNAGATAGCNGAGACGGNTGGT
rJMFF041P09+ CCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTGGT
____________________________________________________________
consensus CCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTGGT
. : . : . : . : . : . :
rJMSF001N05+ ACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAACA
rJMSF019E11+ ACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAACA
rJMFF048L15+ AAGGTGAAGAAGATATATACTGTTTGAACA
rJMSF035L16+ ACTTGCCCTGTANGTNGCNGGNGCNTGAAGAAGGTGAAGAAGATATNTACTGTTTGAACA
rJMFF041P09+ ACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAACA
____________________________________________________________
consensus ACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAACA
. : . : . : . : . : . :
rJMSF001N05+ TCCCTTATGGACTTGCCACCTCTGTCGCCAATNTGCTGNGTATATACTGTTTGTATCATT
rJMSF019E11+ TCCCTTATGGACTTGCCACCTCTGTCGCCAATNTGCTGNGTATATACTGTTTGTATCATT
rJMFF048L15+ TCCCTTATGGACTTGCCACCTCTGTCGCCAATCTGCGGGGTATATACCGTTTGTATCATT
rJMSF035L16+ TCCCTTATGGACTTGCCNCCTNTGTCGCCAATTTGCTGGGTATATACNGTTTGTATCNTT
rJMFF041P09+ TCCCTTATGGACTTGCCACCTCTGTCGCCAATCTGCTGTGTATATACTGTTTGTATCATT
____________________________________________________________
consensus TCCCTTATGGACTTGCCACCTCTGTCGCCAATCTGCTGGGTATATACTGTTTGTATCATT
. : . : . : . : . : . :
rJMSF001N05+ GTATTCTTGTCAATGTGATAGGCAGGCCCTNTGCCCTTTCCGCCCACCGGTAGCCTTTTN
rJMSF019E11+ GTATTCTTGTCAATGTGATAGGCAGGCCCTNTGCCCTTTCCGCCCACCGGTAGCCTTTTN
rJMFF048L15+ GTATTCTTGTCAATGTGATAGGCAGGCCCTCTGCCCTTTCCGCCCACCGGTAGCCTTTTC
rJMSF035L16+ GTATTNTTGTCAANGNGATAGGCNGGCCCTTTGCCCTTTNCGCCCNCCGGTAGCCTTTTT
rJMFF041P09+ GTATTCTTGTCAATGTGATAGGCAGGCCCTCTGCCCTTTCCGCCCACCGGTAGCCTTTTC
____________________________________________________________
consensus GTATTCTTGTCAATGTGATAGGCAGGCCCTCTGCCCTTTCCGCCCACCGGTAGCCTTTTC
. : . : . : . : . : . :
rJMSF001N05+ TTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATATTTGA-AGCTGCGCCC-A
rJMSF019E11+ TTATAAGGGAAACACGTATTTTTTCTGNGACTGACTTGAATATTTGA-AGCTGCGCCC-A
rJMFF048L15+ TTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATATCTGATAGCTGCGCCCTA
rJMSF035L16+ TTNTAAGGGAAACNCGTATTTTTTNTGNGACTGACTTGAATATTTGA-AGNTGCGCCC-A
rJMFF041P09+ TTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATATTTGA-AGCTGCGCCC-A
____________________________________________________________
consensus TTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATATTTGA-AGCTGCGCCC-A
. : . : . : . : . : . :
rJMSF001N05+ ACGTCG-GACGACTTTGTACTTCTCAGTGATAGTGAGGTGGTTCAAAGATANCCAGGTTG
rJMSF019E11+ ACGTCG-GACGACTTTGTACTTNTCAGTGATAGTGAGGNGGTTCAAAGATA-CCAGGTTG
rJMFF048L15+ ACGTCGCTACGACTTTGTACCTCGTAGTGATAGTGAGGTGGTTCAAAGATA-CCAGGTTG
rJMSF035L16+ ACGTCG-GNCGACTTTGTACTT
rJMFF041P09+ ACGTCG-GACGACTTTGTACTTCTCAGTGATAGTGAGGTGGTTCAAAGATA-CCAGGTTG
____________________________________________________________
consensus ACGTCG-GACGACTTTGTACTTCTCAGTGATAGTGAGGTGGTTCAAAGATA-CCAGGTTG
. : . : . : . : . : . :
rJMSF001N05+ GTGATGATAGTTAAACCGATGTATATTGAACTTGTAAAACC
rJMSF019E11+ GNGATGATAGTTAAA-CGATGTATATTGAACTTGTAAAACC-CCTAGTA-TTTTTTTTTT
rJMFF048L15+ GTGATGACTCTTCTA-CGATGTATATTGAACTTGTAAAACC
rJMFF041P09+ GTGATGATAGTTAAA-CGATGTATATTGAACTTGTAAAACCNCCTAGTATTTTTTTTTTT
____________________________________________________________
consensus GTGATGATAGTTAAA-CGATGTATATTGAACTTGTAAAACCNCCTAGTATTTTTTTTTTT
. : . : . : . : . : . :
rJMSF019E11+ TAATGTTATCCTGCAACGTTTATTTGTCTTCCCTCTAGTACACTCAAATCT
rJMFF041P09+ TAATGTTATCCTGCAACGTTTATTTGTCTTCCCTCTAGTACACTCAAATCTTAGTGGTCG
____________________________________________________________
consensus TAATGTTATCCTGCAACGTTTATTTGTCTTCCCTCTAGTACACTCAAATCTTAGTGGTCG