Previous Contig 010136:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009O09Sequence284007439 (9)gb:AF083788_17670186e-04Arabidopsis thaliana clone sps857 unknown mRNA.689010136 (11)gb:AF209910_17773132e-45Prunus dulcis vacuolar sorting receptor protein mRNA, partial cds.
JMFF031N13Sequence506007439 (9)pir|T02604|T026042e-48probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC004705713010136 (11)gb:AF209910_17773133e-45Prunus dulcis vacuolar sorting receptor protein mRNA, partial cds.
JMFF041H09Sequence653007439 (9)pir|T02604|T026045e-76probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC004705632010136 (11)pir|T02602|T026022e-23vacuolar sorting receptor protein homolog At2g14740 - Arabidopsis thaliana>gb:AC
JMFF046I17Sequence618007439 (9)pir|T02604|T026045e-55probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC004705538010136 (11)gb:AF209910_17773136e-11Prunus dulcis vacuolar sorting receptor protein mRNA, partial cds.
JMFF049C19Sequence471007439 (9)pir|F84706|F847063e-34probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC002338402010136 (11)
JMFF049F12Sequence616007439 (9)pir|T02604|T026045e-55probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC004705380010136 (11)
JMFF050H09Sequence606007439 (9)pir|T02604|T026041e-66probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC004705490010136 (11)gb:AF209910_17773138e-13Prunus dulcis vacuolar sorting receptor protein mRNA, partial cds.
JMSF036M14Sequence620007439 (9)pir|T02604|T026041e-58probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC004705765010136 (11)pir|T02602|T026022e-56vacuolar sorting receptor protein homolog At2g14740 - Arabidopsis thaliana>gb:AC
JMSF037O08Sequence639007184 (3)gb:AY127574_15804892e-72Arabidopsis thaliana ubiquitin-conjugating enzyme (UBC20) mRNA, complete cds.>gb714010136 (11)gb:AF209910_17773136e-48Prunus dulcis vacuolar sorting receptor protein mRNA, partial cds.
JMSF041L14Sequence739007439 (9)pir|T02604|T026041e-76probable vacuolar sorting receptor [imported] - Arabidopsis thaliana>gb:AC004705663010136 (11)pir|T02602|T026023e-63vacuolar sorting receptor protein homolog At2g14740 - Arabidopsis thaliana>gb:AC
JMSF050M12Sequence697008012 (2)pir|T06794|T06794e-124vacuolar sorting receptor protein BP-80 - garden pea>gb:PSU79958_1702556 Pisum s768010136 (11)pir|T02602|T026028e-58vacuolar sorting receptor protein homolog At2g14740 - Arabidopsis thaliana>gb:AC

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF041L14+ CCAACTCAATAA
                      ____________________________________________________________
consensus CCAACTCAATAA
 
. : . : . : . : . : . :
rJMSF041L14+ TGGAGGTTGCTGGCATGAAACTCGAAATGGACATACTTACTCTGCCTGTGTGCCTTCTGA
rJMSF036M14+ AACTCGAAATGGACATACTTACTCTGCCTGTGTGCCTTCTGA
rJMSF050M12+ AACTCGAAATGGACATACTTACTCTGCCTGTGTGCCTTCTGA
                      ____________________________________________________________
consensus TGGAGGTTGCTGGCATGAAACTCGAAATGGACATACTTACTCTGCCTGTGTGCCTTCTGA
 
. : . : . : . : . : . :
rJMSF041L14+ AGAGGGCAAGTGCACTTGCCCTCC-GGGATTCAAAGGCGATGGTAAGAGTTGTGAAGATA
rJMSF037O08+ CAAGTGCACTTGCCCTCCNGGGATTCAAAGGCGATGGTAAGAGTTGTGAAGATA
rJMSF036M14+ AGAGGGCAAGTGCACTTGCCCTCC-GGGATTCAAAGGCGATGGTAAGAGTTGTGAAGATA
rJMSF050M12+ AGAGGGCAAGTGCACTTGCCCTCC-GGGATTCAAAGGCGATGGTAAGAGTTGTGAAGATA
rJMFF009O09+ AGGCGATGGTAAGAGTTGTGAAGATA
rJMFF031N13+ GCGATGGTAAGAGTTGTGAAGATA
                      ____________________________________________________________
consensus AGAGGGCAAGTGCACTTGCCCTCC-GGGATTCAAAGGCGATGGTAAGAGTTGTGAAGATA
 
. : . : . : . : . : . :
rJMSF041L14+ TTGATGAATGCAAAGACAAGACGGCCTGCCAGTGCCCTGAATGCAGCTGCAAGAATACCT
rJMSF037O08+ TTGATGAATGCAAAGACAAGACGGCCTGCCAGTGCCCTGAATGCAGCTGCAAGAATACCT
rJMSF036M14+ TTGATGAATGCAAAGACAAGACGGCCTGCCAGTGCCCTGAATGCAGCTGCAAGAATACCT
rJMSF050M12+ TTGATGAATGCAAAGACAAGACGGCCTGCCAGTGCCCTGAATGCAGCTGCAAGAATACCT
rJMFF009O09+ TTGATGAATGCAAAGACAAGACGGCCTGCCAGTGCCCTGAATGCAGCTGCAAGAATACCT
rJMFF031N13+ TTGATGAATGCAAAGACAAGACGGCCTGCCAGTGCCCTGAATGCAGCTGCAAGAATACCT
                      ____________________________________________________________
consensus TTGATGAATGCAAAGACAAGACGGCCTGCCAGTGCCCTGAATGCAGCTGCAAGAATACCT
 
. : . : . : . : . : . :
rJMSF041L14+ GGGGTAGTTACGACTGCACTTGCAGTAATGGCCTGTTGTATATCAGAGATCACGATACCT
rJMSF037O08+ GGGGTAGTTACGACTGCACTTGCAGTAATGGCCTGTTGTATATCAGAGATCACGATACCT
rJMSF036M14+ GGGGTAGTTACGACTGCACTTGCAGTAATGGCCTGTTGTATATCAGAGATCACGATACCT
rJMSF050M12+ GGGGTAGTTACGACTGCACTTGCAGTAATGGCCTGTTGTATATCAGAGATCACGATACCT
rJMFF009O09+ GGGGTAGTTACGACTGCACTTGCAGTAATGGCCTGTTGTATATCAGAGATCACGATACCT
rJMFF031N13+ GGGGTAGTTACGACTGCACTTGCAGTAATGGCCTGTTGTATATCAGAGATCACGATACCT
rJMFF041H09+ ATGGCCTGTTGTATATCAGAGATCACGATACCT
                      ____________________________________________________________
consensus GGGGTAGTTACGACTGCACTTGCAGTAATGGCCTGTTGTATATCAGAGATCACGATACCT
 
. : . : . : . : . : . :
rJMSF041L14+ GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
rJMSF037O08+ GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
rJMSF036M14+ GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
rJMSF050M12+ GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
rJMFF009O09+ GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
rJMFF031N13+ GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
rJMFF046I17+ GCATGGGCTGCCGTGTGGGTCATTNTGA
rJMFF041H09+ GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
                      ____________________________________________________________
consensus GCATAAGTAAGAGAGCTACCCAAGTCAAATCTGCATGGGCTGCCGTGTGGGTCATTTTGA
 
. : . : . : . : . : . :
rJMSF041L14+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
rJMSF037O08+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
rJMSF036M14+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
rJMSF050M12+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
rJMFF009O09+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
rJMFF031N13+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
rJMFF046I17+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
rJMFF050H09+ GTATACAAATATAGGTTGCGGTCAT
rJMFF041H09+ TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
                      ____________________________________________________________
consensus TAGGATTGGGCGTGGTTGCTGGTGGGGCATATCTCGTATACAAATATAGGTTGCGGTCAT
 
. : . : . : . : . : . :
rJMSF041L14+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMSF037O08+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMSF036M14+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMSF050M12+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMFF009O09+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMFF031N13+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMFF046I17+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMFF050H09+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
rJMFF041H09+ ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
                      ____________________________________________________________
consensus ACATGGACACGGAGATCAGGGCCATAATGGCGCAGTACATGCCACTCGACAACCAGAGCG
 
. : . : . : . : . : . :
rJMSF041L14+ AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMSF037O08+ AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMSF036M14+ AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMSF050M12+ AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMFF009O09+ AAATTCCAAATCACGTCATTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMFF031N13+ AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMFF046I17+ AAATTCCAAATCACGTCATTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMFF050H09+ AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMFF049C19+ ATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMFF049F12+ CCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
rJMFF041H09+ AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
                      ____________________________________________________________
consensus AAATTCCAAATCACGTCAGTGATAGCCGGGCTTGAGAGGCGTTCATATAAGTTCACACAA
 
. : . : . : . : . : . :
rJMSF041L14+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMSF037O08+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMSF036M14+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMSF050M12+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMFF009O09+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMFF031N13+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMFF046I17+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMFF050H09+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMFF049C19+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMFF049F12+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
rJMFF041H09+ CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
                      ____________________________________________________________
consensus CCGCGAGTCCTGCTGGAGAAGGAAACGCCCGATCATCATTACTCCGTATTCTTTTTTCAT
 
. : . : . : . : . : . :
rJMSF041L14+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMSF037O08+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMSF036M14+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMSF050M12+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMFF009O09+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMFF031N13+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMFF046I17+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMFF050H09+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMFF049C19+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAATTACAGTAGATTAT
rJMFF049F12+ ATTTTCGGATAATGAGGGAATTACCCAGTCACATACTTGTCTCCAACGACAGTAGATTAT
rJMFF041H09+ ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
                      ____________________________________________________________
consensus ATTTTCGGATAATGAGGGAATTACACAGTCACATACTTGTCTCCAACGACAGTAGATTAT
 
. : . : . : . : . : . :
rJMSF041L14+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAANCTAGTAATCTTT
rJMSF037O08+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMSF036M14+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMSF050M12+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMFF009O09+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMFF031N13+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMFF046I17+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMFF050H09+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMFF049C19+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMFF049F12+ TGTTTTTAAGAGTCAAATATGGACCCAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
rJMFF041H09+ TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
                      ____________________________________________________________
consensus TGTTTTTAAGAGTCAAATATGGACACAATAATGGTGGAA-CTAGTAATCTTTTGTTGTCA
 
. : . : . : . : . : . :
rJMSF037O08+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMSF036M14+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMSF050M12+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMFF009O09+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMFF031N13+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMFF046I17+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMFF050H09+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMFF049C19+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMFF049F12+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
rJMFF041H09+ TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
                      ____________________________________________________________
consensus TGTAACGCGACGAGTTAGGGAGTTTAGTGAAGGAACAAAAATGGTGTTTAGTTCATGCAT
 
. : . : . : . : . : . :
rJMSF037O08+ GCATGCAGATTGCAGCCATGTAAATGTTATCTNGGATGAATGTTCCTCATGCGTGCT
rJMSF036M14+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTT
rJMSF050M12+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
rJMFF009O09+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
rJMFF031N13+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
rJMFF046I17+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
rJMFF050H09+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
rJMFF049C19+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
rJMFF049F12+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
rJMFF041H09+ GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
                      ____________________________________________________________
consensus GCATGCAGATTGCAGCCATGTAAATGTTATCTTGGATGAATGTTCCTCATGCGTGCTTGA
 
. : . : . : . : . : . :
rJMSF050M12+ TCT
rJMFF009O09+ TCTT
rJMFF031N13+ TCTTGATTGATGTAAGGGGAGTTATAAT
rJMFF046I17+ TCTTGATTGATGTAAGGGGAGTTATAATGC
rJMFF050H09+ TCTTGATTGATGTAAGGGGAGTTATAATGCTACTTAATTTGT
rJMFF049C19+ TCTTGATTGATGTAAGGGGAGTTATAATGCTACTTAATTTGT
rJMFF049F12+ TCTTGATTGATGTAAGGGGAGTTATAATGCTACTTAATTTGT
rJMFF041H09+ TCTTGATTGATGTAAGGGGAGTTATAATGCTACTTAATTTGTACCCAAAAAAAAAAAAAA
                      ____________________________________________________________
consensus TCTTGATTGATGTAAGGGGAGTTATAATGCTACTTAATTTGTACCCAAAAAAAAAAAAAA