Previous Contig 010090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040N15Sequence480005760 (3)gb:LTU73105_16854316e-50Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds.757010090 (3)gb:AB015475_15125944e-69Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.>gb:BT015359_1642
JMSF018I23Sequence366005760 (3)gb:LTU73106_16854329e-26Liriodendron tulipifera high-pI laccase (LAC2-4) mRNA, complete cds.739010090 (3)gb:LTU73105_16854315e-80Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds.
JMSF049D09Sequence681005760 (3)gb:LTU73106_16854328e-88Liriodendron tulipifera high-pI laccase (LAC2-4) mRNA, complete cds.748010090 (3)gb:AB015475_15125944e-71Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.>gb:BT015359_1642

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF018I23+ TGCTTCAATTAACAATGTATCTTTTGTGCAGCCTA
                      ____________________________________________________________
consensus TGCTTCAATTAACAATGTATCTTTTGTGCAGCCTA
 
. : . : . : . : . : . :
rJMSF018I23+ CCACAGCCCTTCTGCAGGCGCATTTCTCCGGCCAATCTAACCATGTTTATAGCCCAAACT
rJMSF049D09+ CTGCAGGCGCATTTCTCCGGCCAATCCAACCATGTTTATAGCCCATACT
rJMFF040N15+ TTCTCCGGCCAATCCAACCATGTTTATAGCCCATACT
                      ____________________________________________________________
consensus CCACAGCCCTTCTGCAGGCGCATTTCTCCGGCCAATCCAACCATGTTTATAGCCCATACT
 
. : . : . : . : . : . :
rJMSF018I23+ TTCCAGTTAGTCCCTTGCACTGGTTTAATTACACTGGAAATCCTCCCAACAACACTATGG
rJMSF049D09+ TCCCAGTTAGTCCCTTGCACTGGTTTAATTACACTGGAAATCCCCCCAACAACACTATGG
rJMFF040N15+ TCCCAGTTAGTCCCTTGCACTGGTTTAATTACACTGGAAATCCCCCCAACAACACTATGG
                      ____________________________________________________________
consensus TCCCAGTTAGTCCCTTGCACTGGTTTAATTACACTGGAAATCCCCCCAACAACACTATGG
 
. : . : . : . : . : . :
rJMSF018I23+ TCAGCAATGGAACAAAAGTTATGGTTTTGAATTTTAACACCAGTGTTGAGTTGGTGATGC
rJMSF049D09+ TCAGCAATGGAACAAAAGTTATGGTTTTGAATTATAACACCAGTGTTGAGTTGGTGATGC
rJMFF040N15+ TCAGCAATGGAACAAAAGTTATGGTTTTGAATTATAACACCAGTGTTGAGTTGGTGATGC
                      ____________________________________________________________
consensus TCAGCAATGGAACAAAAGTTATGGTTTTGAATTATAACACCAGTGTTGAGTTGGTGATGC
 
. : . : . : . : . : . :
rJMSF018I23+ AAGATACCAGCATTCTTGGCGCGGAGAGCCACCCTCTTCATCTTCATGGCTTCAACTTTT
rJMSF049D09+ AAGATACCAGCATTCTTAGCGCGGAGAGCCACCCTCTTCATCTTCACGGCTTCAACTTTT
rJMFF040N15+ AAGATACCAGCATTCTTAGCGCGGAGAGCCACCCTCTTCATCTTCACGGCTTCAACTTTT
                      ____________________________________________________________
consensus AAGATACCAGCATTCTTAGCGCGGAGAGCCACCCTCTTCATCTTCACGGCTTCAACTTTT
 
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rJMSF018I23+ TCGTGGTTGGACAAGGTTTCGGAAACTTTAACCAAACAAAGGACCCAAAGAATTTTAACC
rJMSF049D09+ TCGTGGTCGGACAAGGTTTCGGAAACTTTGATCGCACAAATGACCCGAAGAATTTTAACC
rJMFF040N15+ TCGTGGTCGGACAAGGTTTCGGAAACTTTGATCGCACAAATGACCCGAAGAATTTTAACC
                      ____________________________________________________________
consensus TCGTGGTCGGACAAGGTTTCGGAAACTTTGATCGCACAAATGACCCGAAGAATTTTAACC
 
. : . : . : . : . : . :
rJMSF018I23+ TTGTTGATCCTGTTGAAAGAAACACTGTGGGTGTCCCCGCTGGTGGTTGGGTAGCTATTC
rJMSF049D09+ TTGTTGATCCCGTTGAAAGAAACACCATTGGTGTCCCCCCTGGTGGTTGGGTAGCTATTC
rJMFF040N15+ TTGTTGATCCCGTTGAAAGAAACACCATTGGTGTCCCCCCTGGTGGTTGGGTAGCTATTC
                      ____________________________________________________________
consensus TTGTTGATCCCGTTGAAAGAAACACCATTGGTGTCCCCCCTGGTGGTTGGGTAGCTATTC
 
. : . : . : . : . : . :
rJMSF018I23+ GATTCTTGGCTGATAATCCAGGTGTGTGGTTCATGCATTGCCACTTGGAAGTGCATACAA
rJMSF049D09+ GATTCTTGGCTGATAACCCAGGTGTGTGGTTCATGCATTGCCACTTGGAAGTGCATACAA
rJMFF040N15+ GATTCTTGGCTGATAACCCAGGTGTGTGGTTCATGCATTGCCACTTGGAAGTGCATACAA
                      ____________________________________________________________
consensus GATTCTTGGCTGATAACCCAGGTGTGTGGTTCATGCATTGCCACTTGGAAGTGCATACAA
 
. : . : . : . : . : . :
rJMSF018I23+ GCTGGGGTTTGAAGATGGCATGGCTTGTATTGGATGGAAAGCTTCCCAACCAAAAGCTCC
rJMSF049D09+ GCTGGGGTTTGAAGATGGCATGGCTTGTATTGGATGGAAAACTTCCCAACCAGAAGCTCC
rJMFF040N15+ GCTGGGGTTTGAAGATGGCATGGCTTGTATTGGATGGAAAACTTCCCAACCAGAAGCTCC
                      ____________________________________________________________
consensus GCTGGGGTTTGAAGATGGCATGGCTTGTATTGGATGGAAAACTTCCCAACCAGAAGCTCC
 
. : . : . : . : . : . :
rJMSF018I23+ TTCCTCCTCCCTCTGATCTACCAAAATG
rJMSF049D09+ TTCCTCCTCCATCTGATCTACCAAAATGCTGATCAGATCACTTTAATTTGCAGCATTGTT
rJMFF040N15+ TTCCTCCTCCATCTGATCTACCAAAATGCTGATCAGATCACTTTAATTTGCAGCATTGTT
                      ____________________________________________________________
consensus TTCCTCCTCCATCTGATCTACCAAAATGCTGATCAGATCACTTTAATTTGCAGCATTGTT
 
. : . : . : . : . : . :
rJMSF049D09+ ATTAATGGAGTATTCTTAATTAATTTCTTTGCAGATATATGAGTTTTATTTCATTCTCTC
rJMFF040N15+ ATTAATGGAGTATTCTTAATTAATTTCTTTGCAGATATATGAGTTTTATTTCATTCTCTC
                      ____________________________________________________________
consensus ATTAATGGAGTATTCTTAATTAATTTCTTTGCAGATATATGAGTTTTATTTCATTCTCTC
 
. : . : . : . : . : . :
rJMSF049D09+ CGGACGACGACCCTGCAGTTTCATTCCTGTTTTAATTTGTTTTTTTAGTTATTATTATTA
rJMFF040N15+ CGGACGACGACCCTGCAGTTTCATTCCTGTTTTAATTTGTTTTTTTAGTTATTATTATTA
                      ____________________________________________________________
consensus CGGACGACGACCCTGCAGTTTCATTCCTGTTTTAATTTGTTTTTTTAGTTATTATTATTA
 
. : . : . : . : . : . :
rJMSF049D09+ TATTATTTTTTGTAATAGCTGACTCACCTATAATTTTCAACCACATCAACTCCTGTATTG
rJMFF040N15+ TATTATTTTTTGTAATAGCTGACTCACCTATAATTTTCAACCACATCAGCTCCTGTATTG
                      ____________________________________________________________
consensus TATTATTTTTTGTAATAGCTGACTCACCTATAATTTTCAACCACATCAGCTCCTGTATTG
 
. : . : . : . : . : . :
rJMSF049D09+ ACCGTGTTTGTAATGTTGGTTATTAATTAAT
rJMFF040N15+ ACCGTGTTTGTAATGTTGGTTATTAATTAATTGAATAATGTTTAATAATGCAAACGAGTA
                      ____________________________________________________________
consensus ACCGTGTTTGTAATGTTGGTTATTAATTAATTGAATAATGTTTAATAATGCAAACGAGTA