Previous Contig 010015:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038N11Sequence622007307 (2)gb:AY087994_15730183e-62Arabidopsis thaliana clone 40229 mRNA, complete sequence.764010015 (2)gb:AB118014_15278180.021Oryza sativa (japonica cultivar-group) bip127 mRNA for BRI1-KD interacting prote
JMSF039K22Sequence571007307 (2)gb:AY087994_15730181e-50Arabidopsis thaliana clone 40229 mRNA, complete sequence.858010015 (2)gb:AB118014_15278187e-13Oryza sativa (japonica cultivar-group) bip127 mRNA for BRI1-KD interacting prote

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039K22+ TTCTGCAAAAAC
                      ____________________________________________________________
consensus TTCTGCAAAAAC
 
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rJMSF039K22+ TGAAGTATTTGACTGCGACCGGGAAACTTATGAAGATGTCACGGAAATATAGGATAGTTC
                      ____________________________________________________________
consensus TGAAGTATTTGACTGCGACCGGGAAACTTATGAAGATGTCACGGAAATATAGGATAGTTC
 
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rJMSF039K22+ CATCTTCATTGTTGTCTAACAATACAAGAAACCCTCCCATTCCAATCTTAGAGGGCAGGG
                      ____________________________________________________________
consensus CATCTTCATTGTTGTCTAACAATACAAGAAACCCTCCCATTCCAATCTTAGAGGGCAGGG
 
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rJMSF039K22+ AGAGAATCTTGCCTAAGGTTGATCGGTATGATATTGATATGCTCACTAAATCTCAGATTG
rJMFF038N11+ ATGATATTGATATGCTCACTAAATCTCAGATTG
                      ____________________________________________________________
consensus AGAGAATCTTGCCTAAGGTTGATCGGTATGATATTGATATGCTCACTAAATCTCAGATTG
 
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rJMSF039K22+ ATTTGGAGTTAGCCAAGATGAGGAGTATGACGCCTCAGGAGGCAGCAGCTACTGCTGCTC
rJMFF038N11+ ATTTGGAGTTAGCCAAGATGAGGAGTATGACGCCTCAGGAGGCAGCAGCTACTGCTGCTC
                      ____________________________________________________________
consensus ATTTGGAGTTAGCCAAGATGAGGAGTATGACGCCTCAGGAGGCAGCAGCTACTGCTGCTC
 
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rJMSF039K22+ AAGCTGTTGCCGAAGCTGAAGCCGCTATAGCAGAAGCTGAACAGGCAGCAAGGGAGGCAG
rJMFF038N11+ AAGCTGTTGCCGAAGCTGAAGCCGCTATAGCAGAAGCTGAACAGGCAGCAAGGGAGGCAG
                      ____________________________________________________________
consensus AAGCTGTTGCCGAAGCTGAAGCCGCTATAGCAGAAGCTGAACAGGCAGCAAGGGAGGCAG
 
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rJMSF039K22+ AGGCAGCAGAAGCTGATGCAGAAGCTGCACTAGCCTTTGCAGAAGCAGCAATGAAGACAG
rJMFF038N11+ AGGCAGCAGAAGCTGATGCAGAAGCTGCACTAGCCTTTGCAGAAGCAGCAATGAAGACAG
                      ____________________________________________________________
consensus AGGCAGCAGAAGCTGATGCAGAAGCTGCACTAGCCTTTGCAGAAGCAGCAATGAAGACAG
 
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rJMSF039K22+ TACATGGGAGAAGCACCCCTAGGATGATGATTCAGGCTTGATGGATTTCGCCAAAGGAGA
rJMFF038N11+ TACATGGGAGAAGCACCCCTAGGATGATGATTCAGGCTTGATGGATTTCGCCAAAGGAGA
                      ____________________________________________________________
consensus TACATGGGAGAAGCACCCCTAGGATGATGATTCAGGCTTGATGGATTTCGCCAAAGGAGA
 
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rJMSF039K22+ ATCCCGATCTCGTAGACCTTAATCCAGATCAAAGGGCAGATGAGTTTCCAGACATCTCAC
rJMFF038N11+ ATCCCGATCTCGTAGACCTTAATCCAGATCAAAGGGCAGATGAGTTTCCAGACATCTCAC
                      ____________________________________________________________
consensus ATCCCGATCTCGTAGACCTTAATCCAGATCAAAGGGCAGATGAGTTTCCAGACATCTCAC
 
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rJMSF039K22+ TCTTACTCCACTCTTGTAAATATGGCGGATTTTCCGGTGACTAGAATCAGGTGGTCAATT
rJMFF038N11+ TCTTACTCCACTCTTGTAAATATGGCGGATTTTCCGGTGACTAGAATCAGGTGGTCAATT
                      ____________________________________________________________
consensus TCTTACTCCACTCTTGTAAATATGGCGGATTTTCCGGTGACTAGAATCAGGTGGTCAATT
 
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rJMSF039K22+ TGTAACCTTGAATGCATCTTCTGGCTGCTGACAAGCTTGGATATGTTGTGTTTTCCTTTT
rJMFF038N11+ TGTAACCTTGAATGCATCTTCTGGCTGCTGACAAGCTTGGATATGTTGTGTTTTCCTTTT
                      ____________________________________________________________
consensus TGTAACCTTGAATGCATCTTCTGGCTGCTGACAAGCTTGGATATGTTGTGTTTTCCTTTT
 
. : . : . : . : . : . :
rJMSF039K22+ GTTTTTTGGATGTTTCTGTTTAGGTGTTGACAGATAGATAAGCCGGTAATCTGTAAGGGA
rJMFF038N11+ GTTTTTTGGATGTTTCTGTTTAGGTGTTGACAGATAGATAAGCCGGTAATCTGTAAGGGA
                      ____________________________________________________________
consensus GTTTTTTGGATGTTTCTGTTTAGGTGTTGACAGATAGATAAGCCGGTAATCTGTAAGGGA
 
. : . : . : . : . : . :
rJMSF039K22+ AAATCTTGGTGGATATAAACCAGGAACACTTGTTCAGGTAAAATGGGAAAGGGGAAGTTT
rJMFF038N11+ AAATCTTGGTGGATATAAACCAGGAACACTTGTTCAGGTAAAATGGGAAAGGGGAAGTTT
                      ____________________________________________________________
consensus AAATCTTGGTGGATATAAACCAGGAACACTTGTTCAGGTAAAATGGGAAAGGGGAAGTTT
 
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rJMSF039K22+ CAGTCTTCTGGTAGTATGGGAACCTTCTTCATAGAAATCCAGGCATTCATTGTGCTTAGT
rJMFF038N11+ CAGTCTTCTGGTAGTATGGGAACCTTCTTCATAGAAATCCAGGCATTCATTGTGCTTAGT
                      ____________________________________________________________
consensus CAGTCTTCTGGTAGTATGGGAACCTTCTTCATAGAAATCCAGGCATTCATTGTGCTTAGT
 
. : . : . : . : . : . :
rJMSF039K22+ CGTAGAAAATGCTTCCTCAATCTTCACTTAACAGGAAAAATGTTTTTAGTTTTCATTTCC
rJMFF038N11+ CGTAGAAAATGCTTCCTCAATCTTCACTTAACAGGAAAAATGTTTTTAGTTTTCATTTCC
                      ____________________________________________________________
consensus CGTAGAAAATGCTTCCTCAATCTTCACTTAACAGGAAAAATGTTTTTAGTTTTCATTTCC
 
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rJMSF039K22+ TTGGCT
rJMFF038N11+ TTGGCTTCCTTTTGTTGTTGAAATTTTCGATTTCTCATTGGAAATTGTTGTGTATAAAAC
                      ____________________________________________________________
consensus TTGGCTTCCTTTTGTTGTTGAAATTTTCGATTTCTCATTGGAAATTGTTGTGTATAAAAC