| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF038B11 | Sequence | 575 | 009980 (4) | gb:AC082645_1733171 | 1e-65 | Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence. | 721 | 009980 (4) | gb:AC082645_1733171 | 2e-65 | Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence. |
| JMSF046B06 | Sequence | 711 | 009980 (4) | gb:AC082645_1733171 | 2e-65 | Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence. | 663 | 009980 (4) | gb:AC082645_1733171 | 2e-65 | Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence. |
This contig is upended
. : . : . : . : . : . :
JMFF038B11- ACTATTCAATCTTCATTTCTCTCTTCCTTCCATACAAATCCCCTTTCAAC
rJMSF046B06+ CCCCTTTCAAC
JMSF046B06- CCCCTTTCAAC
rJMFF038B11+ CAAC
____________________________________________________________
consensus ACTATTCAATCTTCATTTCTCTCTTCCTTCCATACAAATCCCCTTTCAAC
. : . : . : . : . : . :
JMFF038B11- TACTCCAAATGCTCCAGGATATGGGTTCTGAGGGTTCATCTGCCGTTGTAGTTCCAAGAA
rJMSF046B06+ TACTCCAAATGCTCCAGGATATGGGTTCTGAGGGTTCATCTGCCGTTGTAGTTCCAAGAA
JMSF046B06- TACTCCAAATGCTCCAGGATATGGGTTCTGAGGGTTCATCTGCCGTTGTAGTTCCAAGAA
rJMFF038B11+ TACTCCAAATGCTCCAGGATATGGGTTCTGAGGGTTCATCTGCCGTTGTAGTTCCAAGAA
____________________________________________________________
consensus TACTCCAAATGCTCCAGGATATGGGTTCTGAGGGTTCATCTGCCGTTGTAGTTCCAAGAA
. : . : . : . : . : . :
JMFF038B11- ACTTCAGATTACTAGAAGAACTTGAGAGGGGAGAAAAGGGAATAGGAGATGGAACTGTCA
rJMSF046B06+ ACTTCAGATTACTAGAAGAACTTGAGAGGGGAGAAAAGGGAATAGGAGATGGAACTGTCA
JMSF046B06- ACTTCAGATTACTAGAAGAACTTGAGAGGGGAGAAAAGGGAATAGGAGATGGAACTGTCA
rJMFF038B11+ ACTTCAGATTACTAGAAGAACTTGAGAGGGGAGAAAAGGGAATAGGAGATGGAACTGTCA
____________________________________________________________
consensus ACTTCAGATTACTAGAAGAACTTGAGAGGGGAGAAAAGGGAATAGGAGATGGAACTGTCA
. : . : . : . : . : . :
JMFF038B11- GCTATGGAATGGATGATGCTGATGATGTTTACATGCAGTCTTGGACTGGAACAATAATTG
rJMSF046B06+ GCTATGGAATGGATGATGCTGATGATGTTTACATGCAGTCTTGGACTGGAACAATAATTG
JMSF046B06- GCTATGGAATGGATGATGCTGATGATGTTTACATGCAGTCTTGGACTGGAACAATAATTG
rJMFF038B11+ GCTATGGAATGGATGATGCTGATGATGTTTACATGCAGTCTTGGACTGGAACAATAATTG
____________________________________________________________
consensus GCTATGGAATGGATGATGCTGATGATGTTTACATGCAGTCTTGGACTGGAACAATAATTG
. : . : . : . : . : . :
JMFF038B11- GTCCTCCAAATACTGTACATGAAGGGCGAATCTACCAGTTGAAGCTGTTCTGCGGACAGG
rJMSF046B06+ GTCCTCCAAATACTGTACATGAAGGGCGAATCTACCAGTTGAAGCTGTTCTGCGGACAGG
JMSF046B06- GTCCTCCAAATACTGTACATGAAGGGCGAATCTACCAGTTGAAGCTGTTCTGCGGACAGG
rJMFF038B11+ GTCCTCCAAATACTGTACATGAAGGGCGAATCTACCAGTTGAAGCTGTTCTGCGGACAGG
____________________________________________________________
consensus GTCCTCCAAATACTGTACATGAAGGGCGAATCTACCAGTTGAAGCTGTTCTGCGGACAGG
. : . : . : . : . : . :
JMFF038B11- ACTATCCTGATAAACCACCCAGTGTAAGGTTTCAAACCAGGATAAACATGAGCTGTGTTA
rJMSF046B06+ ATTATCCTGATAAACCACCCAGTGTAAGGTTTCAAACCAGGATAAACATGAGCTGTGTTA
JMSF046B06- ATTATCCTGATAAACCACCCAGTGTAAGGTTTCAAACCAGGATAAACATGAGCTGTGTTA
rJMFF038B11+ ACTATCCTGATAAACCACCCAGTGTAAGGTTTCAAACCAGGATAAACATGAGCTGTGTTA
____________________________________________________________
consensus ATTATCCTGATAAACCACCCAGTGTAAGGTTTCAAACCAGGATAAACATGAGCTGTGTTA
. : . : . : . : . : . :
JMFF038B11- ATCAAGAAACTGGTGTGGTTGAACCGATTCTTTTCCCCATGCTTGCTGATTGGAAAAGGG
rJMSF046B06+ ATCAAGAAACTGGTGTGGTTGAACCGATTCTTTTCCCCATGCTTGCTGATTGGAAAAGGG
JMSF046B06- ATCAAGAAACTGGTGTGGTTGAACCGATTCTTTTCCCCATGCTTGCTGATTGGAAAAGGG
rJMFF038B11+ ATCAAGAAACTGGTGTGGTTGAACCGATTCTTTTCCCCATGCTTGCTGATTGGAAAAGGG
____________________________________________________________
consensus ATCAAGAAACTGGTGTGGTTGAACCGATTCTTTTCCCCATGCTTGCTGATTGGAAAAGGG
. : . : . : . : . : . :
JMFF038B11- AGCACACAATGGAGGATGTATTATTGCAGTTGAAAAAGGATATGATGTCTCCCCAAAATC
rJMSF046B06+ AGCACACAATGGAGGATGTATTATTGCAGTTGAAAAAGGATATGATGTCTCCCCAAAATC
JMSF046B06- AGCACACAATGGAGGATGTATTATTGCAGTTGAAAAAGGATATGATGTCTCCCCAAAATC
rJMFF038B11+ AGCACACAATGGAGGATGTATTATTGCAGTTGAAAAAGGATATGATGTCTCCCCAAAATC
____________________________________________________________
consensus AGCACACAATGGAGGATGTATTATTGCAGTTGAAAAAGGATATGATGTCTCCCCAAAATC
. : . : . : . : . : . :
JMFF038B11- GAAAGCTAGTTCAACCTCCTGAAGCAGGCAACGAAGATGGGCGGGTGGATCAAAAAGGGA
rJMSF046B06+ GAAAGCTAGTTCAACCTCCTGAAGCAGGCAACGAAGATGGGCGGGTGGATCAAAAAGGGA
JMSF046B06- GAAAGCTAGTTCAACCTCCTGAAGCAGGCAACGAAGATGGGCGGGTGGATCAAAAAGGGA
rJMFF038B11+ GAAAGCTAGTTCAACCTCCTGAAGCAGGCAACGAAGATGGGCGGGTGGATCAAAAAGGGA
____________________________________________________________
consensus GAAAGCTAGTTCAACCTCCTGAAGCAGGCAACGAAGATGGGCGGGTGGATCAAAAAGGGA
. : . : . : . : . : . :
JMFF038B11- TTGTGCTAAGGTGTTGCATCCTCTAATTGTGAGTATACCATCGAA
rJMSF046B06+ TTGTGCTAAGGTGTTGCATCCTCTAATTGTGAGTATACCATCGAACATCGAGATGTACAT
JMSF046B06- TTGTGCTAAGGTGTTGCATCCTCTAATTGTGAGTATACCATCGAACATCGAGATGTACAT
rJMFF038B11+ TTGTGCTAAGGTGTTGCATCCTCTAATTGTGAGTATACCATCGAACATCGAGATGTACAT
____________________________________________________________
consensus TTGTGCTAAGGTGTTGCATCCTCTAATTGTGAGTATACCATCGAACATCGAGATGTACAT
. : . : . : . : . : . :
rJMSF046B06+ AGCCTTTAACAAATAATCTCTTGGAACCCTTAATATATATTATATAACTATATATATATG
JMSF046B06- AGCCTTTAACAAATAATCTCTTGGAACCCTTAATATATATTATATAACTATATATATATG
rJMFF038B11+ AGCCTTTAACAAATAATCTCTTGGAACCCTTAATATATATTATATAAC--TATATATATG
____________________________________________________________
consensus AGCCTTTAACAAATAATCTCTTGGAACCCTTAATATATATTATATAACTATATATATATG
. : . : . : . : . : . :
rJMSF046B06+ TAAGCATATGCTGCATGTGTACTTGTANCCTGTGGATACTGATG
JMSF046B06- TAAGCATATGCTGCATGTGTACTTGTA-CCTGTGGATACTGATGTGATATTCCAATTCAC
rJMFF038B11+ TAAGCATATGCTGCATGTGTACTTGTA-CCTGTGGATACTGATGTGATATTCCAATTCAC
____________________________________________________________
consensus TAAGCATATGCTGCATGTGTACTTGTA-CCTGTGGATACTGATGTGATATTCCAATTCAC
. : . : . : . : . : . :
JMSF046B06- CTTTATCATACACAATGGCTTGAGAGAT
rJMFF038B11+ CTTTATCATACACAATGGCTTGAGAGATTCAATATCAAATTTCAAATTCTATGAATAAGC
____________________________________________________________
consensus CTTTATCATACACAATGGCTTGAGAGATTCAATATCAAATTTCAAATTCTATGAATAAGC