| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034M11 | Sequence | 491 | 006549 (5) | gb:AY830138_1629338 | 1e-07 | Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence. | 734 | 009832 (4) | |||
| JMSF021P15 | Sequence | 685 | 006549 (5) | gb:AY830138_1629338 | 0.003 | Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence. | 720 | 009832 (4) | |||
| JMSF022K13 | Sequence | 671 | 006549 (5) | gb:AY830138_1629338 | 2e-07 | Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence. | 741 | 009832 (4) | gb:AX076881_1460669 | 2e-05 | Sequence 2 from Patent WO0107635.>gb:AX076883_1460670 Sequence 4 from Patent WO0 |
| JMSF028O10 | Sequence | 625 | 006549 (5) | gb:AY830138_1629338 | 4e-07 | Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence. | 615 | 009832 (4) | gb:SAC249448_1704670 | 5e-16 | Solanum acaule Rx2.ac15 gene for NBS-LRR protein, exons 1-3. |
This contig is upended
. : . : . : . : . : . :
rJMSF028O10+ GTNAGCTGTAAAAATCTTATGAAGTTGAGCTNTAGGTGTGTGAGCTTTGAGGTG
____________________________________________________________
consensus GTNAGCTGTAAAAATCTTATGAAGTTGAGCTNTAGGTGTGTGAGCTTTGAGGTG
. : . : . : . : . : . :
rJMSF028O10+ AAGACAATTAATAGTTTTAGCAAGTTGCCTAAACTTGAGGTGCTAGTGCTAAGCAAGTGT
____________________________________________________________
consensus AAGACAATTAATAGTTTTAGCAAGTTGCCTAAACTTGAGGTGCTAGTGCTAAGCAAGTGT
. : . : . : . : . : . :
rJMSF028O10+ GACTGGATCGGTGGAGCGTGGGAACTACTTGAAAAGGAGAGTTTTGACCAGTTAATTTAT
____________________________________________________________
consensus GACTGGATCGGTGGAGCGTGGGAACTACTTGAAAAGGAGAGTTTTGACCAGTTAATTTAT
. : . : . : . : . : . :
rJMSF028O10+ TTGGAAATTAATACGAGTAATTTTCTTGAGCGTTGGGAAGCAAGTGCTTCAAATTTTCCG
____________________________________________________________
consensus TTGGAAATTAATACGAGTAATTTTCTTGAGCGTTGGGAAGCAAGTGCTTCAAATTTTCCG
. : . : . : . : . : . :
rJMSF028O10+ AAACTTGAGCGTCTAGTCCTTGATTGGTGCGAAGTATTGGAAAAGATCCCAGTTGGGTTT
rJMSF022K13+ AAAGATTCCAGTTGAGTTT
____________________________________________________________
consensus AAACTTGAGCGTCTAGTCCTTGATTGGTGCGAAGTATTGGAAAAGATTCCAGTTGGGTTT
. : . : . : . : . : . :
rJMSF028O10+ GCAGAAATTCCAAATTTGAAGTCAATCAAAGTGTATGAATGTCTTCAGTCTGTAGTGGAT
rJMSF022K13+ GCAGAAATTCCAAATTTGAAGTCAATTGAATTGGATTACTGTCTTCCTTCTGCGGTGGAT
____________________________________________________________
consensus GCAGAAATTCCAAATTTGAAGTCAATTGAATTGTATTACTGTCTTCCTTCTGTGGTGGAT
. : . : . : . : . : . :
rJMSF028O10+ TCTGCCAAGGAAATTCAAAGAGAGCAACATGAGCAAGGAAATGATAATATGGTTGTCATT
rJMSF022K13+ TCTGCCAAGAAAATTCAAAAAGAGCAACATGAGCAAGGAAATGAAAATATGGTTGTCATT
____________________________________________________________
consensus TCTGCCAAGGAAATTCAAAGAGAGCAACATGAGCAAGGAAATGATAATATGGTTGTCATT
. : . : . : . : . : . :
rJMSF028O10+ GA
rJMSF022K13+ GAGGAACACACACTACAGTGATTCATGGCAGCCTAGCTCTCGCAATGATAAACATATTAG
____________________________________________________________
consensus GAGGAACACACACTACAGTGATTCATGGCAGCCTAGCTCTCGCAATGATAAACATATTAG
. : . : . : . : . : . :
rJMSF021P15+ AAAGCAAGGTGACATACAGCTCCCACAGTACACTCTTAGCTC
rJMSF022K13+ AGTTGATCCATATTTCAAAAAGCAAGGTGACATACAGCTCCCACAGTACACTCTTAGCTC
rJMFF034M11+ AAAGCAAGGTGACATACAGCTCCCACAGTACACTCTTAGCTC
____________________________________________________________
consensus AGTTGATCCATATTTCAAAAAGCAAGGTGACATACAGCTCCCACAGTACACTCTTAGCTC
. : . : . : . : . : . :
rJMSF021P15+ CAATTCAATGGCTCCGATATCTTGGACACCGCCACCCTAGCTTGTAAAATCCAACGCTTT
rJMSF022K13+ CAATTCAATGGCTCCGATATCTTGGACACCGCCACCCTAGCTTGTAAAATCCAACGCTTT
rJMFF034M11+ CAATTCAATGGCTCCGATATCTTGGACACCGCCACCCTAGCTTGTAAAATCCAACGCTTT
____________________________________________________________
consensus CAATTCAATGGCTCCGATATCTTGGACACCGCCACCCTAGCTTGTAAAATCCAACGCTTT
. : . : . : . : . : . :
rJMSF021P15+ TCATCGTTAATGATTCGGCTGGTTTCGACCAGGTAGTAAGTTCTCCTTCATAAATCTGGG
rJMSF022K13+ TCATCGTTAATGATTCGGCTGGTTTCGACCAGGTAGTAAGTTCTCCTTCATAAATCTGGG
rJMFF034M11+ TCATCGTTAATGATTCGGCTGGTTTCGACCAGGTAGTAAGTTCTCCTTCATAAATCTGGG
____________________________________________________________
consensus TCATCGTTAATGATTCGGCTGGTTTCGACCAGGTAGTAAGTTCTCCTTCATAAATCTGGG
. : . : . : . : . : . :
rJMSF021P15+ CACTTTAATTTGTTGTAGCTTGTTATGGGAAGTTTGCTTAGAACTGTGATCCGGGTTTAG
rJMSF022K13+ CACTTTAATTTGTTGTAGCTTGTTATGGGAAGTTTGCTTAGAACTGTGATCCGGGTTTAG
rJMFF034M11+ CACTTTAATTTGTTGTAGCTTGTTATGGGAAGTTTGCTTAGAACTGTGATCCGGGTTTAG
____________________________________________________________
consensus CACTTTAATTTGTTGTAGCTTGTTATGGGAAGTTTGCTTAGAACTGTGATCCGGGTTTAG
. : . : . : . : . : . :
rJMSF021P15+ CCAAAACTATATATTGCTTGTTGCGAGGCTTTATCATGGCTTAAATGGAGATGTATTAAT
rJMSF022K13+ CCAAAACTATATATTGCTTGTTGCGAGGCTTTATCATGGCTTAAATGGAGATGTATTAAT
rJMFF034M11+ CCAAAACTATATATTGCTTGTTGCGAGGCTTTATCATGGCTTAAATGGAGATGTATTAAT
____________________________________________________________
consensus CCAAAACTATATATTGCTTGTTGCGAGGCTTTATCATGGCTTAAATGGAGATGTATTAAT
. : . : . : . : . : . :
rJMSF021P15+ AACGTCATCCTAGAGTTGAGACAGACAATTTTAAATTTTGTTAATGTTTCTCATGATTAT
rJMSF022K13+ AACGTCATCCTAGAGTTGAGACAGACAATTTTAAATTTTGTTAATGTTTCTCATGATTAT
rJMFF034M11+ AACGTCATCCTAGAGTTGAGACAGACAATTTTAAATTTTGTTAATGTTTCTCATGATTAT
____________________________________________________________
consensus AACGTCATCCTAGAGTTGAGACAGACAATTTTAAATTTTGTTAATGTTTCTCATGATTAT
. : . : . : . : . : . :
rJMSF021P15+ TCAACTTTAGTTATTGACCACTTTAGATTCTACTATTGGGGATGTTTTAGTTCGTCATGT
rJMSF022K13+ TCAACTTTAGTTATTGACCACTTTAGATTCTACTATTGGGGATGTTTTAGTTCGTCATGT
rJMFF034M11+ TCAACTTTAGTTATTGACCACTTTAGATTCTACTATTGGGGATGTTTTAGTTCGTCATGT
____________________________________________________________
consensus TCAACTTTAGTTATTGACCACTTTAGATTCTACTATTGGGGATGTTTTAGTTCGTCATGT
. : . : . : . : . : . :
rJMSF021P15+ TGGTAAATCATCAAATCATTCTGCTCATGCTTTGACACGGGTTTTAGGTTCTCAAGCTAG
rJMSF022K13+ TGGTAAATCATCAAATCATTCTGCTCATGCTTTGACACGGGTTTTAGGTTCTCAAGCTAG
rJMFF034M11+ TGGTAAATCATCAAATCATTCTGCTCATGCTTTGACACGGGTTTTAGGTTCTCAAGCTAG
____________________________________________________________
consensus TGGTAAATCATCAAATCATTCTGCTCATGCTTTGACACGGGTTTTAGGTTCTCAAGCTAG
. : . : . : . : . : . :
rJMSF021P15+ TTCGAGGGTGTGGTATTTTAATTCGTAGCCTCTTATTGC
rJMSF022K13+ TTCGAGGGTGTGGTATTTTAATTCGTAGCCTCTTATTGC
rJMFF034M11+ TTCGAGGGTGTGGTATTTTAATTCGTAGCCTCTTATTGCATGTATTCCTGTGTTAAATTC
____________________________________________________________
consensus TTCGAGGGTGTGGTATTTTAATTCGTAGCCTCTTATTGCATGTATTCCTGTGTTAAATTC