Previous Contig 009787:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033N17Sequence530004345 (6)gb:AY059387_15645359e-36Olea europaea putative cullin protein mRNA, complete cds.718009787 (6)gb:AC084296_17334533e-93Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence.
JMFS082B05Sequence629009787 (6)gb:AC084296_1733453e-107Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence.
JMSF001L08Sequence348004345 (6)gb:AY059387_15645353e-05Olea europaea putative cullin protein mRNA, complete cds.767009787 (6)gb:AC084296_1733453e-103Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence.
JMSF009P10Sequence291004345 (6)gb:AY059387_15645355e-10Olea europaea putative cullin protein mRNA, complete cds.709009787 (6)gb:AL451005_19280947e-76Human DNA sequence from clone RP11-92B10 on chromosome X Contains the 5' end of
JMSF025K20Sequence638004345 (6)gb:AY059387_15645358e-62Olea europaea putative cullin protein mRNA, complete cds.756009787 (6)gb:AC084296_1733453e-102Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence.
JMSF034G24Sequence682004345 (6)gb:AY059387_15645352e-55Olea europaea putative cullin protein mRNA, complete cds.627009787 (6)gb:AY091113_15743376e-77Arabidopsis thaliana putative cullin (At5g46210) mRNA, complete cds.

Alignment

This contig is upended


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JMFS082B05- GAATCA
                      ____________________________________________________________
consensus GAATCA
 
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JMFS082B05- TTTAAGCAATCATCCCAAGCAAGGACTAAACTCCCAATGGGAATTGAGATGAGTGTCCAT
                      ____________________________________________________________
consensus TTTAAGCAATCATCCCAAGCAAGGACTAAACTCCCAATGGGAATTGAGATGAGTGTCCAT
 
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JMFS082B05- GTGTTAACTACTGGGTACTGGCCAACATATCCACCCATGGATGTTCGGCTTCCTCATGAA
rJMSF025K20+ A
rJMSF001L08+ A
                      ____________________________________________________________
consensus GTGTTAACTACTGGGTACTGGCCAACATATCCACCCATGGATGTTCGGCTTCCTCATGAA
 
. : . : . : . : . : . :
JMFS082B05- CTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTCAGCAAATACAGTGGGAGGCGC
rJMSF009P10+ AGCAAATACAGTGAGAGGCGC
rJMSF025K20+ CTCAATGTGTATCAGGATATTTTCAAGGAG-TTTACCTAAGCAAATACAGTGGGAGGCGC
rJMSF001L08+ CTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTAAGCAAATACAGTGGGAGGCGC
rJMFF033N17+ GC
                      ____________________________________________________________
consensus CTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTAAGCAAATACAGTGGGAGGCGC
 
. : . : . : . : . : . :
JMFS082B05- TTAATGTGGCAAAATTCATTGGGCCATTGTGTCCTGAAAGCAGAATTTCTCAAAGGTAAA
rJMSF034G24+ AGG
rJMSF009P10+ TTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAGG
rJMSF025K20+ TTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAGG
rJMSF001L08+ TTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAGG
rJMFF033N17+ TTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAGG
                      ____________________________________________________________
consensus TTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAGG
 
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JMFS082B05- AAGGAGCTGGCTGTTTCCCTATTTCAGACTGTTGTTTTGATGC-TTTTCAATGATGCGGA
rJMSF034G24+ AAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGCTTTTTCAATGAAGCGGA
rJMSF009P10+ AAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGGA
rJMSF025K20+ AAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGGA
rJMSF001L08+ AAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGGA
rJMFF033N17+ AAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGGA
                      ____________________________________________________________
consensus AAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGGA
 
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JMFS082B05- AACTCTTAGCTTTCAAGATATAAAAGAGGCCACTAGCATTGAAGATAAAGAGCTAAGGAG
rJMSF034G24+ AAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGAG
rJMSF009P10+ AAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGAG
rJMSF025K20+ AAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGAG
rJMSF001L08+ AAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGAG
rJMFF033N17+ AAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGAG
                      ____________________________________________________________
consensus AAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGAG
 
. : . : . : . : . : . :
JMFS082B05- GACTTTGCAATCTCTTGCATGTGGGAAGGTGCGGGTTCTACAAAAGCTACCAAAAGGAAG
rJMSF034G24+ GACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAAG
rJMSF009P10+ GACTTTACAATCCCTT-CATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAAG
rJMSF025K20+ GACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAAG
rJMSF001L08+ GACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAAG
rJMFF033N17+ GACTTTACAATCCNTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAAG
                      ____________________________________________________________
consensus GACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAAG
 
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JMFS082B05- AGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAATTTACAGCTCCACTTTATCG
rJMSF034G24+ AGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATCG
rJMSF009P10+ AGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATCG
rJMSF025K20+ AGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATCG
rJMSF001L08+ AGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATCG
rJMFF033N17+ AGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATCG
                      ____________________________________________________________
consensus AGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATCG
 
. : . : . : . : . : . :
JMFS082B05- TATAAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACAAGTACCACTGA
rJMSF034G24+ AATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAGA
rJMSF009P10+ AATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAGA
rJMSF025K20+ AATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAGA
rJMSF001L08+ AATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGA-AACACGAGCACCACAGA
rJMFF033N17+ AATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAGA
                      ____________________________________________________________
consensus AATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAGA
 
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JMFS082B05- GAGGTTATTCCAGGACCGTCAATACCAGGTTGATGCTGCCATTGTTAGGATAATGAAGAC
rJMSF034G24+ AAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAAC
rJMSF009P10+ AAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAAC
rJMSF025K20+ AAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAAC
rJMSF001L08+ AAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAAC
rJMFF033N17+ AAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAAC
                      ____________________________________________________________
consensus AAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAAC
 
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JMFS082B05- CAGAAAAGT
rJMSF034G24+ CAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTCC
rJMSF009P10+ CAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTCC
rJMSF025K20+ CAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTCC
rJMSF001L08+ CAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTCC
rJMFF033N17+ CAGAAAAGTCNTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTCC
                      ____________________________________________________________
consensus CAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTCC
 
. : . : . : . : . : . :
rJMSF034G24+ AATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGGA
rJMSF009P10+ AATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGGA
rJMSF025K20+ AATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGGA
rJMSF001L08+ AATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGGA
rJMFF033N17+ AATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACNTGGA
                      ____________________________________________________________
consensus AATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGGA
 
. : . : . : . : . : . :
rJMSF034G24+ GCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGGC
rJMSF009P10+ GCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGGC
rJMSF025K20+ GCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGGC
rJMSF001L08+ GCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGGC
rJMFF033N17+ GCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGANTAGACTAGGC
                      ____________________________________________________________
consensus GCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGGC
 
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rJMSF034G24+ TTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTCAAAATGGTGT
rJMSF009P10+ TTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTCAAAATGGTGT
rJMSF025K20+ TTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTGT
rJMSF001L08+ TTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTGT
rJMFF033N17+ TTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTGT
                      ____________________________________________________________
consensus TTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTGT
 
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rJMSF034G24+ ACCAGTTACCTTGTTTTAATGAGC
rJMSF009P10+ ACCAGTTA-CTTGTTTTAATGAGCTGAC
rJMSF025K20+ ACCAGTTA-CTTGTTTTAATGAGCTGAC
rJMSF001L08+ ANCAGTTA-CTTGTTTTAATGAGCTGACAACTGTGTAAATCACAT
rJMFF033N17+ A-CAGTTA-CTTGTTTTAATGAGCTGACAACTGTGTAAATCACATTTCTGATTATTAAGT
                      ____________________________________________________________
consensus ACCAGTTA-CTTGTTTTAATGAGCTGACAACTGTGTAAATCACATTTCTGATTATTAAGT