Previous Contig 009676:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029M05Sequence533008002 (4)745009676 (4)gb:AK117483_18155164e-88Arabidopsis thaliana At5g48150 mRNA for putative SCARECROW gene regulator, compl
JMFF031H17Sequence522008002 (4)759009676 (4)gb:AK117483_18155166e-69Arabidopsis thaliana At5g48150 mRNA for putative SCARECROW gene regulator, compl
JMSF047F22Sequence691008002 (4)gb:AY062210_15650053e-08Oryza sativa chitin-inducible gibberellin-responsive protein (GIGR2) mRNA, compl721009676 (4)gb:AK117483_18155164e-88Arabidopsis thaliana At5g48150 mRNA for putative SCARECROW gene regulator, compl
JMSF050I19Sequence712008002 (4)gb:BT001076_16353312e-05Arabidopsis thaliana At4g17230/dl4650c mRNA, complete cds.>gb:AF419570_1798432 A777009676 (4)gb:AK117483_18155164e-88Arabidopsis thaliana At5g48150 mRNA for putative SCARECROW gene regulator, compl

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF047F22+ TGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
rJMFF029M05+ CCATGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
rJMSF050I19+ TGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
                      ____________________________________________________________
consensus CCATGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
 
. : . : . : . : . : . :
rJMSF047F22+ ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
rJMFF029M05+ ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
rJMSF050I19+ ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
                      ____________________________________________________________
consensus ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
 
. : . : . : . : . : . :
rJMSF047F22+ GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
rJMFF029M05+ GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
rJMSF050I19+ GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
rJMFF031H17+ GACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCNTAAG
                      ____________________________________________________________
consensus GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
 
. : . : . : . : . : . :
rJMSF047F22+ GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
rJMFF029M05+ GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
rJMSF050I19+ GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
rJMFF031H17+ GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
                      ____________________________________________________________
consensus GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
 
. : . : . : . : . : . :
rJMSF047F22+ CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
rJMFF029M05+ CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
rJMSF050I19+ CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
rJMFF031H17+ CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
                      ____________________________________________________________
consensus CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
 
. : . : . : . : . : . :
rJMSF047F22+ GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
rJMFF029M05+ GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
rJMSF050I19+ GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
rJMFF031H17+ GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
                      ____________________________________________________________
consensus GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
 
. : . : . : . : . : . :
rJMSF047F22+ ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
rJMFF029M05+ ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
rJMSF050I19+ ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
rJMFF031H17+ ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
                      ____________________________________________________________
consensus ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
 
. : . : . : . : . : . :
rJMSF047F22+ CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
rJMFF029M05+ CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
rJMSF050I19+ CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
rJMFF031H17+ CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
                      ____________________________________________________________
consensus CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
 
. : . : . : . : . : . :
rJMSF047F22+ AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
rJMFF029M05+ AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
rJMSF050I19+ AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
rJMFF031H17+ AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
                      ____________________________________________________________
consensus AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
 
. : . : . : . : . : . :
rJMSF047F22+ TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
rJMFF029M05+ TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
rJMSF050I19+ TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
rJMFF031H17+ TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
                      ____________________________________________________________
consensus TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
 
. : . : . : . : . : . :
rJMSF047F22+ GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
rJMFF029M05+ GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
rJMSF050I19+ GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
rJMFF031H17+ GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
                      ____________________________________________________________
consensus GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
 
. : . : . : . : . : . :
rJMSF047F22+ TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
rJMFF029M05+ TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
rJMSF050I19+ TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
rJMFF031H17+ TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
                      ____________________________________________________________
consensus TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
 
. : . : . : . : . : . :
rJMSF047F22+ TCAATGATTATTGGCTCAG
rJMFF029M05+ TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTA
rJMSF050I19+ TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTAATTCCCAGTGAAAGGACTG
rJMFF031H17+ TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTAATTCCCAGTGAAAGGACTG
                      ____________________________________________________________
consensus TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTAATTCCCAGTGAAAGGACTG
 
. : . : . : . : . : . :
rJMSF050I19+ ACTTATTGGTCTTCTT
rJMFF031H17+ ACTTATTGGTCTTCTTGGTTTGAGCTAGTCAGCTATGTTCAACTTAGCCTGGTTTATCTC
                      ____________________________________________________________
consensus ACTTATTGGTCTTCTTGGTTTGAGCTAGTCAGCTATGTTCAACTTAGCCTGGTTTATCTC
 
. : . : . : . : . : . :
rJMFF031H17+ TTTGCAGTCCTTTGTCGGCTAAAGGGGGAAGTTATGAGTTTCTCTCGTCATAAAAAAAGC
                      ____________________________________________________________
consensus TTTGCAGTCCTTTGTCGGCTAAAGGGGGAAGTTATGAGTTTCTCTCGTCATAAAAAAAGC