| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011G17 | Sequence | 587 | 009612 (10) | pir|G86287|G86287 | 9e-30 | hypothetical protein F9L1.28 - Arabidopsis thaliana>gb:AE005172_890531 Arabidops | 531 | 009612 (10) | |||
| JMFF029O19 | Sequence | 729 | 009612 (10) | gb:AF286471S2_1895034 | 6e-06 | Homo sapiens retinitis pigmentosa GTPase regulator (RPGR) gene, exon ORF15 parti | |||||
| JMFF035C15 | Sequence | 528 | 009612 (10) | gb:AB017071_1513504 | 3e-29 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSJ11.>gb:BT015051_164 | 672 | 009612 (10) | gb:AF286471S2_1895034 | 9e-06 | Homo sapiens retinitis pigmentosa GTPase regulator (RPGR) gene, exon ORF15 parti |
| JMSF007J21 | Sequence | 320 | 009612 (10) | gb:AF083737_1766967 | 2e-20 | Arabidopsis thaliana clone sps418 unknown mRNA. | 774 | 009612 (10) | gb:AF286471S2_1895034 | 8e-07 | Homo sapiens retinitis pigmentosa GTPase regulator (RPGR) gene, exon ORF15 parti |
| JMSF008J21 | Sequence | 315 | 018579 | gb:AY273869_604976 | 0.005 | Pseudomonas aeruginosa PA14 pathogenicity island PAPI-1, complete sequence. | 666 | 009612 (10) | gb:AF385629_1419334 | 0.001 | Canis familiaris retinitis pigmentosa GTPase regulator (RPGR) gene, exon ORF15 a |
| JMSF019F13 | Sequence | 583 | 009612 (10) | gb:AY863051_1630985 | 1e-28 | Zea mays putative methyl-binding domain protein MBD115 mRNA, complete cds. | 629 | 006915 (20) | gb:AF098458_1767915 | 2e-53 | Hevea brasiliensis latex-abundant protein (LAR) mRNA, complete cds. |
| JMSF050D24 | Sequence | 659 | 020520 | 722 | 009612 (10) | pir|G86287|G86287 | 1e-10 | hypothetical protein F9L1.28 - Arabidopsis thaliana>gb:AE005172_890531 Arabidops | |||
This contig is upended
. : . : . : . : . : . :
JMSF019F13- GGG
____________________________________________________________
consensus GGG
. : . : . : . : . : . :
JMSF007J21- GA
JMFF035C15- GTAGAGCTTTCTAGTTTCTAGCATTTAGAGAGAGAGAGAGA
JMSF019F13- ACCAGTGGCACGTATGTGAGTAGAGCTTTCTAGTTTCTAGCATTTAGAGAGAGAGAGAGA
____________________________________________________________
consensus ACCAGTGGCACGTATGTGAGTAGAGCTTTCTAGTTTCTAGCATTTAGAGAGAGAGAGAGA
. : . : . : . : . : . :
JMSF007J21- GAGAGGAACAGAGCTGGTAGCTAGTCCTGCGTTTTTCTTTGATTGGGGGAGACGAAAATG
JMFF035C15- GAGAGGAACAGAGCTGGTAGCTAGTCCTGCGTTTTTCTTTGATT-GGGGAGACGAAAATG
JMSF019F13- GAGAGGAACAGAGCTGGTAGCTAGTCCTGCGTTTTTCTTTGATT-GGGGAGACGAAAATG
JMFF011G17- AGCTAGTCCTGCGTTTTTCTTTGATT-GGGGAGACGAAAATG
____________________________________________________________
consensus GAGAGGAACAGAGCTGGTAGCTAGTCCTGCGTTTTTCTTTGATT-GGGGAGACGAAAATG
. : . : . : . : . : . :
JMSF007J21- GCGAATTCTGAAGAAAAGATGGCTCAAAACCTGACTGAAGGAACAGATGGAGTTCTCTCT
JMFF035C15- GCGAATTCTGAAGAAAAGATGGCTCAAAACCTGACTCAAGGAACAGATGGAGTTCTCTCT
JMSF019F13- GCGAATTCTGAAGAAAAGATGGCTCAAAACCTGACTCAAGGAACAGATGGAGTTCTCTCT
JMFF011G17- GCGAATTCTGAAGAAAAGATGGCTCAAAACCTGACTCAAGGAACAGATGGAGTTCTCTCT
____________________________________________________________
consensus GCGAATTCTGAAGAAAAGATGGCTCAAAACCTGACTCAAGGAACAGATGGAGTTCTCTCT
. : . : . : . : . : . :
JMSF007J21- GTGGAGCTTCCTGCACCTCCTTCTTGGAAGAAATTGTTAATGCATAGTGGAGGCAAGGTT
JMFF035C15- GTGGAGCTTCCTGCACCTCCTTCTTGGAAGAAATTGTTAATGCATAGTGGAGGCAAGGTT
JMSF019F13- GTGGAGCTTCCTGCACCTCCTTCTTGGAAGAAATTGTTAATGCATAGTGGAGGCAAGGTT
JMFF011G17- GTGGAGCTTCCTGCACCTCCTTCTTGGAAGAAATTGTTAATGCATAGTGGAGGCAAGGTT
____________________________________________________________
consensus GTGGAGCTTCCTGCACCTCCTTCTTGGAAGAAATTGTTAATGCATAGTGGAGGCAAGGTT
. : . : . : . : . : . :
JMSF007J21- GTGTTTATTGCTCCCACTGGGGAAGAGATCACTAGCAAGAGACAGTTAAGCCAGTATCTG
JMFF035C15- GTGTTTATTGCTCCCACTGGGGAAGAGATCACTAGCAAGAGACAGTTAAGCCAGTATCTG
JMSF019F13- GTGTTTATTGCTCCCACTGGGGAAGAGATCACTAGCAAGAGACAGTTAAGCCAGTATCTG
JMFF011G17- GTGTTTATTGCTCCCACTGGGGAAGAGATCACTAGCAAGAGACAGTTAAGCCAGTATCTG
____________________________________________________________
consensus GTGTTTATTGCTCCCACTGGGGAAGAGATCACTAGCAAGAGACAGTTAAGCCAGTATCTG
. : . : . : . : . : . :
JMSF007J21- AAATCACACCCTGGTAATCCTGCACCATCCAGCTTTGATTGGGGTACTGGTGATACTCCN
JMFF035C15- AAATCACACCCTGGTAATCCTGCACCATCCAGCTTTGATTGGGGTACTGGTGATACTCCA
JMSF019F13- AAATCACACCCTGGTAATCCTGCACCATCCAGCTTTGATTGGGGTACTGGTGATACTCCA
JMFF011G17- AAATCACACCCTGGTAATCCTGCACCATCCAGCTTTGATTGGGGTACTGGTGATACTCCA
rJMSF050D24+ CTCCN
____________________________________________________________
consensus AAATCACACCCTGGTAATCCTGCACCATCCAGCTTTGATTGGGGTACTGGTGATACTCCA
. : . : . : . : . : . :
JMSF007J21- AGAAGATCTGCAAGGAT
JMFF035C15- AGAAGATCTGCAAGGATCAGTGGAAAGGTCAAGGCCAATCCCTCCCCTTCAGAGACCGAG
JMSF019F13- AGAAGATCTGCAAGGATCAGTGGAAAGGTCAAGGCCAATCCCTCCCCTTCAGAGACCGAG
JMFF011G17- AGAAGATCTGCAAGGATCAGTGGAAAGGTCAAGGCCAATCCCTCCCCTTCAGAGACCGAG
rJMSF050D24+ AGAAGATCTGCAAGGATCAGTGGAAAGGTCAAGGCCAATCCTTCCCCTTCAGAGACCGAG
____________________________________________________________
consensus AGAAGATCTGCAAGGATCAGTGGAAAGGTCAAGGCCAATCCCTCCCCTTCAGAGACCGAG
. : . : . : . : . : . :
JMFF035C15- ATGCCCAAGAAACGACGTAGAATGTCATCTGGAAGAAAGGATAGCCAGCAGGAAACCGGT
JMSF019F13- ATGCCCAAGAAACGACGTANAATGTCATCTGGAAGAAAGGATAGCCAGCAGGAAACCGGT
JMFF011G17- ATGCCCAAGAAACGACGTAGAATGTCATCTGGAAGAAAGGATAGCCAGCAGGAAACCGGT
rJMSF050D24+ ATGCCCAAGAAACGACGTAGAATGTCATCTGGAAGAAAGGATAGCCAGCAGGAAACCGGT
rJMSF007J21+ GACGTAGAGTGTCATCTGGAAGAAAGGATAGCCAGCAGGAAACCGGT
____________________________________________________________
consensus ATGCCCAAGAAACGACGTAGAATGTCATCTGGAAGAAAGGATAGCCAGCAGGAAACCGGT
. : . : . : . : . : . :
JMFF035C15- GAAACTGAGAGCGTGGAGATGAAAGATCTGGCAGCTTCGAACGAAGAGGGTGTGAAAGAA
JMSF019F13- GAAACTGAGAGCGTGGAGATGAAAGATCTGGCAGCTTCGAACGAAGAGGGTGTGAAAGAA
JMFF011G17- GAAACTGAGAGCGTGGAGATGAAAGATCTGGCAGCTTCGAACGAAGAGGGTGTGAAAGAA
rJMSF050D24+ GAAACTGAGAGCGTGGAGATGAAAGATCTGGCAGCTTCGAACGAAGAGGGTGTGAAAGAA
rJMFF035C15+ GAGATGAAAGATCTGGCAGCTTGGAACGAAGAGGGTGTGAAAGAA
rJMSF007J21+ GAAACTGAGAGCGTGGAGAAGAAAAATCTGGCAGCTTCGAACGAAGAGGGTGTGAAAGAA
rJMFF029O19+ GAAGAGGGTGTGAAAGAA
____________________________________________________________
consensus GAAACTGAGAGCGTGGAGATGAAAGATCTGGCAGCTTCGAACGAAGAGGGTGTGAAAGAA
. : . : . : . : . : . :
JMFF035C15- GTCGAAAC
JMSF019F13- GTCGAAACTCCAAATGTTGAATCCACTGAACATGAGGGTGT
JMFF011G17- GTCGAAACTCCAAATGTTGAATCCACTGAACATGAGGGTGTGGAGAAAGGAAATATAACC
rJMSF050D24+ GTCGAAACTCCAAATGTTGAATCCACTGAACATGAGGGTGTGGAGAAAGGAAATATAACC
rJMSF008J21+ TCCAAATGTTGAATCCGCTGAACATGAGGGTGTGGAGAAAGGAAATATAACC
rJMFF035C15+ GTCGAAACTCCAAATGTTGAATCCACTGAACATGAGGGTGTGGAGAAAGGAAATATAACC
rJMSF007J21+ GTCGAAACTCCAAATGTTGAATCCGCTGAACATGAGGGTGTGGAGAAAGGAAATATAACC
rJMFF029O19+ GTCGAAACTCCAGATGTTGAATCCACTGAACATGAGGGTGTGGAGAAAGGAAATATANCC
____________________________________________________________
consensus GTCGAAACTCCAAATGTTGAATCCACTGAACATGAGGGTGTGGAGAAAGGAAATATAACC
. : . : . : . : . : . :
JMFF011G17- ACACAGATTCAAGGTGAAACTGAAGATAATAATCTGCAAGATGGCGCTGAAAAGGAAAAT
rJMSF050D24+ ACACAGATTCAAGGTGAAACTGAAGATAATAATCTGCAAGATGGCGCTGAAAAGGAAAAT
rJMSF008J21+ ACACAGTTTCAAGGTGAAACTGAAGATAATAATCTGCAAGATGGTGCTGAAAAGGAAAAT
rJMFF035C15+ ACACAGATTCAAGGTGAAACTGAAGATAATAATCTGCAAGATGGCGCTGAAAAGGAAAAT
rJMSF007J21+ ACACAGTTTCAAGGTGAAACTGAAGATAATAATCTGCAAGATGGTGCTGAAAAGGAAAAT
rJMFF011G17+ AAGGTGAAGCTGANGATAATAATCTGCAAGATGGCGNTGAAAAGGAAAAT
rJMFF029O19+ ACACAGATTCAAGGTGAAACTGAAGATAATAATCTGCAAGATGGCGCTGAAAAGGAAAAT
____________________________________________________________
consensus ACACAGATTCAAGGTGAAACTGAAGATAATAATCTGCAAGATGGCGCTGAAAAGGAAAAT
. : . : . : . : . : . :
JMFF011G17- GCATCA
rJMSF050D24+ GCATCAGAGGTTGAGGTCGAGGTT------GGGGGAAACGCTAGTACTAAAGATGGGAAT
rJMSF008J21+ GCATCAGAGGTTGAGGTTGAGGTTGAGGTCGGGGGAAACGCTAGTACTAAAGATGGGAAT
rJMFF035C15+ GCATCAGAGGTTGAGGTCGAGGTT------GGGGGAAACGCTAGTACTAAAGATGGGAAT
rJMSF007J21+ GCATCAGAGGTTGAGGTTGAGGTTGAGGTCGGGGGAAACGCTAGTACTAAAGATGGGAAT
rJMFF011G17+ GCATCAGAGGTTGAGGTCGAGGTT------GGGGGAAACGNTAGTANTAAAGATGGGANT
rJMFF029O19+ GCATCAGAGGTTGAGGTCGAGGTT------GGGGGAAACGCTAGTACTAAAGATGGGAAT
____________________________________________________________
consensus GCATCAGAGGTTGAGGTCGAGGTT------GGGGGAAACGCTAGTACTAAAGATGGGAAT
. : . : . : . : . : . :
rJMSF050D24+ ACCTTGGATGGCTCCAAGGATGGAAACGACGGGACATCCTGGGAGGCAAATAAGACTGAA
rJMSF008J21+ ACCTTGGATGGCTCCAAGGATGGAAACTACGGGACATCCTGGGAGGCAAATAAGACTGAA
rJMFF035C15+ ACCTTGGATGGCTCCAAGGATGGAAACGACGGGACATCCTGGGAGGCAAATAAGACTGAA
rJMSF007J21+ ACCTTGGATGGCTCCAAGGATGGAAACTACGGGACATCCTGGGAGGCAAATAAGACTGAA
rJMFF011G17+ ACCTTGGATGGCTCCAAGGATGGAAACGNCGNGNCATCNTGGGAGGCAAATAAGNCTGAA
rJMFF029O19+ ACCTTGGATGGCTCCAAGGATGGAAACGACGGGACATCCTGGGAGGCAAATAAGACTGAA
____________________________________________________________
consensus ACCTTGGATGGCTCCAAGGATGGAAACGACGGGACATCCTGGGAGGCAAATAAGACTGAA
. : . : . : . : . : . :
rJMSF050D24+ CAAGTTTCAAGTGCAGAAGGTAAAGCTGAAGGGAAACTGGGATCTGGAGAAGCCCCAGAG
rJMSF008J21+ CAAGCTTCAAGGGCAGAAGGTAAAGCTGAAGGGAAACCGGGATCTGGAGAAGCCCCAGAG
rJMFF035C15+ CAAGTTTCAAGTGCAGAAGGTAAAGCTGAAGGGAAACTGGGATCTGGAGAAGCCCCAGAG
rJMSF007J21+ CAAGCTTCAAGGGCAGAAGGTAAAGCTGAAGGGAAACCGGGATCTGGAGAAGCCCCAGAG
rJMFF011G17+ CAAGTTTCAAGTGCAGAAGGTAAAGCTGAAGGGAANCTGNGATNTGGAGAAGCCCCAGAG
rJMFF029O19+ CAAGTTTCAAGTGCAGAAGGTAAAGCTGAAGGGAAACTGGGATCTGGAGAAGCCCCAGAG
____________________________________________________________
consensus CAAGTTTCAAGTGCAGAAGGTAAAGCTGAAGGGAAACTGGGATCTGGAGAAGCCCCAGAG
. : . : . : . : . : . :
rJMSF050D24+ AAGGAGAGTTCTGCTGCAGTGGAAGATGAAACGAAGGAAATCCAGGAAAACGATAGCGAA
rJMSF008J21+ AAGGAGAGTTCTGCTGCAATGGAAGATGAAACGAAGGAAATCCAGGAAAACGATAGCGAA
rJMFF035C15+ AAGGAGAGTTCTGCTGCAGTGGAAGATGAAACGAAGGAAATCCAGGAAAACGATAGCGAA
rJMSF007J21+ AAGGAGAGTTCTGCTGCAATGGAAGATGAAACGAAGGAAATCCAGGAAAACGATAGCGAA
rJMFF011G17+ AAGGAGAGTTCTGCTGCAGTGGAAGATGANACGAAGGAANTCCAGGAAAANGATAGNGAA
rJMFF029O19+ AAGGAGAGTTCTGCTGCAGTGGAAGATGAAACGAAGGAAATCCAGGAAAACGATAGCGAA
____________________________________________________________
consensus AAGGAGAGTTCTGCTGCAGTGGAAGATGAAACGAAGGAAATCCAGGAAAACGATAGCGAA
. : . : . : . : . : . :
rJMSF050D24+ TTGAAGTTGCAGGAAGAGAAGGCCGGAAATAGTAGGAATGGGTTGGTCCAGGGGTTCGCG
rJMSF008J21+ TTGAAGTTGCAGGAAGAGAAGGCCGGAAATAGTAGGAACGGGTTGTTCCAGGGGTTCGCG
rJMFF035C15+ TTGAAGTTGCAGGAAGAGAAGGCCGGAAATAGTAGGAATGGGTTGGTCCAGGGGTTCGCG
rJMSF007J21+ TTGAAGTTGCAGGAAGAGAAGGCCGGAAATAGTAGGAACGGGTTGTTCCAGGGGTTCGCG
rJMFF011G17+ TNGAAGNTGCAGGAAGAGAAGGCCGGAAATAGTAGGAATGGGTTGNTCCAGGGGTTCGAG
rJMFF029O19+ TTGAAGTTGCAGGAAGAGAAGGCCGGAAATAGTAGGAATGGGTTGGTCCAGGGGTTCGCG
____________________________________________________________
consensus TTGAAGTTGCAGGAAGAGAAGGCCGGAAATAGTAGGAATGGGTTGGTCCAGGGGTTCGCG
. : . : . : . : . : . :
rJMSF050D24+ AATACCCCACACCATCCCTCTCCTGCACCAATTAGCTGCTAAACACAACATGTTTATCTA
rJMSF008J21+ AATACCCCACACCATCCCTCTCCTGCACCAATTAGCTGCTAAACACAACATGTTTATCTA
rJMFF035C15+ AATACCCCACACCATCCCTCTCCTGCACCAATTAGCTGCTAAACACAACATGTTTATCTA
rJMSF007J21+ AATACCCCACACCATCCCTCTCCTGCACCAATTAGCTGCTAAACACAACATGTTTATCTA
rJMFF011G17+ AATACCCCACACCATNCNTCTCCTGCACCAATTAGCTGNTNANCACAACATGNTTATGTA
rJMFF029O19+ AATACCCCACACCATCCCTCTCCTGCACCAATTAGCTGCTAAACACAACATGTTTATCTA
____________________________________________________________
consensus AATACCCCACACCATCCCTCTCCTGCACCAATTAGCTGCTAAACACAACATGTTTATCTA
. : . : . : . : . : . :
rJMSF050D24+ GATTGTGTCCAGTCTCATCTGCATTGTATTGTTCATCCTTTATAATCCTTTTGATTAC
rJMSF008J21+ GATTGTGTCCAGTCTCATCTGCATTGTATTGTTCATCCTTTATAATCCTTTTGATTACTG
rJMFF035C15+ GATTGTGTCCAGTCTCATCTGCATTGTATTGTTCATCCTTTATAATCCTTTTGATTACTG
rJMSF007J21+ GATTGTGTCCAGTCTCATCTGCATTGTATTGTTCATCCTTTATAATCCTTTTGATTACTG
rJMFF011G17+ GATTGTNTCCAGTNTCATCNGCATNGTATTGTTCATCCNTTATNATCCTTNTGATTNCTG
rJMFF029O19+ GATTGTGTCCAGTCTCATCTGCATTGTATTGTTCATCCTTTATAATCCTTTTGATTACTG
____________________________________________________________
consensus GATTGTGTCCAGTCTCATCTGCATTGTATTGTTCATCCTTTATAATCCTTTTGATTACTG
. : . : . : . : . : . :
rJMSF008J21+ TAATATTAATGAGACTATCAGTGGTAGGCTTCGTTGTTACTTGTTAGGATNTTACCTTTA
rJMFF035C15+ TAATATTAATGAGACTATCAGTGGTAGGCTTCGTTGTTACTTGTTAGGATATTACCTTTA
rJMSF007J21+ TAATATTAATGAGACTATCAGTGGTAGGCTTCGTTGTTACTTGTTAGGATATTACCTTTA
rJMFF011G17+ TAATANTAATGAGANNATCAGTGGTAGGCTTCGTTGTTACTTGNTAGGATANTACCNTNA
rJMFF029O19+ TAATATTAATGAGACTATCAGTGGTAGGCTTCGTTGTTACTTGTTAGGATATTACCTTTA
____________________________________________________________
consensus TAATATTAATGAGACTATCAGTGGTAGGCTTCGTTGTTACTTGTTAGGATATTACCTTTA
. : . : . : . : . : . :
rJMSF008J21+ TAGGACTTTCTATGTTTCTGCCATACGCCAGCTATTGTGAACTTATGTGTTTGTAGGTAG
rJMFF035C15+ TAGGACTTTCTATGTTTCTGCCATA
rJMSF007J21+ TAGGACTTTCTATGTTTCTGCCATA-GCCAGCTA-TGTGAACTTATGTGTTTGTA-GTAG
rJMFF011G17+ TAGGACT
rJMFF029O19+ TAGGACTTTCTATGTTTCTGCCATA-GCCAGCTA-TGTGAACTTATGTGTTTGTA-GTAG
____________________________________________________________
consensus TAGGACTTTCTATGTTTCTGCCATA-GCCAGCTA-TGTGAACTTATGTGTTTGTA-GTAG
. : . : . : . : . : . :
rJMSF008J21+ ATATACTGAC
rJMSF007J21+ ATATACTGAC
rJMFF029O19+ ATATACTGACTTGCAATACTTGTGCATGTTTGTGTTCAAGAATTGGCTTTGTTCCGTTGA
____________________________________________________________
consensus ATATACTGACTTGCAATACTTGTGCATGTTTGTGTTCAAGAATTGGCTTTGTTCCGTTGA