clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF026P14 | Sequence | 517 | 014603 | gb:AY087566_1572596 | 4e-44 | Arabidopsis thaliana clone 36702 mRNA, complete sequence. | 786 | 009477 (2) | gb:AP004868_1846277 | 1e-54 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P004 |
JMFS088D05 | Sequence | 517 | 009477 (2) | gb:AP004868_1846277 | 8e-34 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P004 |
This contig is upended
. : . : . : . : . : . :
rJMFF026P14- GCTTTG
____________________________________________________________
consensus GCTTTG
. : . : . : . : . : . :
rJMFF026P14- TAACTTAGCACCTATAAATAGGACTTCAAAGACATTTGGAGGCAATTCAAGAAATTCTGA
____________________________________________________________
consensus TAACTTAGCACCTATAAATAGGACTTCAAAGACATTTGGAGGCAATTCAAGAAATTCTGA
. : . : . : . : . : . :
rJMFF026P14- TACACTTAAGGCACCATTTCAAAGCATTCTTAGTACTATCCTTCTTAGGCATTACATTTT
____________________________________________________________
consensus TACACTTAAGGCACCATTTCAAAGCATTCTTAGTACTATCCTTCTTAGGCATTACATTTT
. : . : . : . : . : . :
rJMFF026P14- TCACCTCACTTTTGCAATATACTTTCCGGTGAATCCACCAACTTCCGGTTGTGTTGGACC
____________________________________________________________
consensus TCACCTCACTTTTGCAATATACTTTCCGGTGAATCCACCAACTTCCGGTTGTGTTGGACC
. : . : . : . : . : . :
rJMFF026P14- TCCGTGGGCATCTCAAAAGTCCTAAACCAACACGTGTGAAGCGAGAAGTTTTTTTTAAAC
____________________________________________________________
consensus TCCGTGGGCATCTCAAAAGTCCTAAACCAACACGTGTGAAGCGAGAAGTTTTTTTTAAAC
. : . : . : . : . : . :
JMFS088D05+ CCGTGAAGGTGTTGGTGGCATCT
rJMFF026P14- ATCAAAACGAAGTCGTTTTAGACCGTGGCCCACACAGCCGTGAAGGTGTTGGTGGCATCT
____________________________________________________________
consensus ATCAAAACGAAGTCGTTTTAGACCGTGGCCCACACAGCCGTGAAGGTGTTGGTGGCATCT
. : . : . : . : . : . :
JMFS088D05+ GTAACACTCCCATTCGCAACCTCCAAATCAACAGCAGATTTAGCTTGCACAAGACTGTCT
rJMFF026P14- GTAACACTCCCATTCGCAACCTCCAAATCAACAGCAGATTTAGCTTGCACAAGACTGTCT
____________________________________________________________
consensus GTAACACTCCCATTCGCAACCTCCAAATCAACAGCAGATTTAGCTTGCACAAGACTGTCT
. : . : . : . : . : . :
JMFS088D05+ AGGAAGTCCATCACAATGGGGTCGGTCCAGGGAGCTCCGGTTGGGGCATCAGAACCTGCC
rJMFF026P14- AGGAAGTCCATCACAATGGGGTCGGTCCAGGGAGCTCCGGTTGGGGCATCAGAACCTGCC
____________________________________________________________
consensus AGGAAGTCCATCACAATGGGGTCGGTCCAGGGAGCTCCGGTTGGGGCATCAGAACCTGCC
. : . : . : . : . : . :
JMFS088D05+ ACCCATCCAAGATGGCCACCTTGAGGTGTGACTATCAGCAAACAATTTGGGTTTTCCTCA
rJMFF026P14- ACCCATCCAAGATGGCCACCTTGAGGTGTGACTATCAGCAAACAATTTGGGTTTTCCTCA
____________________________________________________________
consensus ACCCATCCAAGATGGCCACCTTGAGGTGTGACTATCAGCAAACAATTTGGGTTTTCCTCA
. : . : . : . : . : . :
JMFS088D05+ ATATCCTTTCGAGGGATTCCTCTTGATGGAGCAATTGGATCATTTGCAGCCTGGATGCAA
rJMFF026P14- ATATCCTTTCGAGGGATTCCTCTTGATGGAGCAATTGGATCATTTGCAGCCTGGATGCAA
____________________________________________________________
consensus ATATCCTTTCGAGGGATTCCTCTTGATGGAGCAATTGGATCATTTGCAGCCTGGATGCAA
. : . : . : . : . : . :
JMFS088D05+ AGTAAAGGAATGCAGACACTTTTAATTGAATCTGAGCTACTTGAGTTTGAATAATAATCA
rJMFF026P14- AGTAAAGGAATGCAGACACTTTTAATTGAATCTGAGCTACTTGAGTTTGAATAATAATCA
____________________________________________________________
consensus AGTAAAGGAATGCAGACACTTTTAATTGAATCTGAGCTACTTGAGTTTGAATAATAATCA
. : . : . : . : . : . :
JMFS088D05+ TCCGCTGACTTAAATCCAAATGAAACTCT
rJMFF026P14- TCCGCTGACTTAAATCCAAATGAAACTCTTGTTATTCCTTCATCAAATTCTTTGACAGTT
____________________________________________________________
consensus TCCGCTGACTTAAATCCAAATGAAACTCTTGTTATTCCTTCATCAAATTCTTTGACAGTT
. : . : . : . : . : . :
rJMFF026P14- TTGGCATTAGCAGCTAATGGGATATTATATTCACCTCCAATATCTTCAAATAAAAGAGCA
____________________________________________________________
consensus TTGGCATTAGCAGCTAATGGGATATTATATTCACCTCCAATATCTTCAAATAAAAGAGCA
. : . : . : . : . : . :
rJMFF026P14- TGCTTTTTGAAAATTTTGCAGAGAGCATTTGCTAGTGCTTTGTCATAAACAATGTTAAAG
____________________________________________________________
consensus TGCTTTTTGAAAATTTTGCAGAGAGCATTTGCTAGTGCTTTGTCATAAACAATGTTAAAG