Previous Contig 009417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018H06Sequence523000400 (8)gb:AC144735_17441209e-22Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0001A14, complet602009417 (4)gb:AY078955_15681107e-25Arabidopsis thaliana AT5g19580/T20D1_100 mRNA, complete cds.>gb:BT001150_1635405
JMFF025N17Sequence751009417 (4)gb:AY078955_15681102e-41Arabidopsis thaliana AT5g19580/T20D1_100 mRNA, complete cds.>gb:BT001150_1635405
JMFF028L06Sequence325000400 (8)gb:AY058872_15644089e-05Arabidopsis thaliana At1g19900/F6F9_4 mRNA, complete cds.421009417 (4)gb:AY078955_15681103e-15Arabidopsis thaliana AT5g19580/T20D1_100 mRNA, complete cds.>gb:BT001150_1635405
JMFF040L04Sequence524000400 (8)gb:AC144735_17441201e-22Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0001A14, complet662009417 (4)gb:AY078955_15681101e-31Arabidopsis thaliana AT5g19580/T20D1_100 mRNA, complete cds.>gb:BT001150_1635405

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF025N17+ ACTGAGTTGACACCAACAAAAATTGCCAGAAT
                      ____________________________________________________________
consensus ACTGAGTTGACACCAACAAAAATTGCCAGAAT
 
. : . : . : . : . : . :
rJMFF040L04+ TTAGTAGCGGGAAGTAACAC
rJMFF025N17+ GTACCATTCCACTTCTGCGGTTTTGCCCGACGCTAAGATCTTAGTAGCGGGAAGTAACAC
                      ____________________________________________________________
consensus GTACCATTCCACTTCTGCGGTTTTGCCCGACGCTAAGATCTTAGTAGCGGGAAGTAACAC
 
. : . : . : . : . : . :
rJMFF018H06+ CGATATGAAAGCCAAATACCCAACCGACATGCGCGTCGAGAAATTNTC
rJMFF040L04+ CCACGATTCCTACGATATGAAAGCCAAATACCCAACCGACATGCGCGTNGAGAAATTCTC
rJMFF025N17+ CCACGTTTCCTACGATATGAAAGCCAAATACCCAACCGACATGCGCGTCGAGAAATTCTC
                      ____________________________________________________________
consensus CCACGTTTCCTACGATATGAAAGCCAAATACCCAACCGACATGCGCGTCGAGAAATTCTC
 
. : . : . : . : . : . :
rJMFF018H06+ GCCGCCGTACTTAGCCCCCGCACTGCAAAAGTTTCGGCCGCAGATCGTGGAGAAGCTTTC
rJMFF028L06+ GGCCGCAGATCGTGGAGAAGCTTTC
rJMFF040L04+ GCCGCCGTACTTAGCCCCCGCACTGCAAAAGTTTCGGCCGCAGATCGTGGAGAAGCTTTC
rJMFF025N17+ GCCGCCGTACTTAGCCCCCACATTGCAAAAGCTCCGGCCGCAGATTGTGGAGAACCTTTC
                      ____________________________________________________________
consensus GCCGCCGTACTTAGCCCCCGCACTGCAAAAGTTTCGGCCGCAGATCGTGGAGAAGCTTTC
 
. : . : . : . : . : . :
rJMFF018H06+ CCAAACGGAATTGGTTTATGGAAAGAATTTCAATATCCATTTCAAGCTAGATGATGCGGC
rJMFF028L06+ CCAAACGGAATTGGTTTATGGAAAGAATTTCAATATCCATTTCAAGNTAGATGATGCGGN
rJMFF040L04+ CCAAACGGAATTGGTTTATGGAAAGAATTTCAATATCCATTTCAAGCTAGATGATGCGGC
rJMFF025N17+ CCAAAAGGAATTGGTTTATGGAAAGAATTTCAATATCCATTTCAAGCTAGATGATGCTGC
                      ____________________________________________________________
consensus CCAAACGGAATTGGTTTATGGAAAGAATTTCAATATCCATTTCAAGCTAGATGATGCGGC
 
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rJMFF018H06+ GGACATGTNTAGTATTAAGGTTACCATGTATCCGCCGCCTTTCACCACTCACGGGTACTT
rJMFF028L06+ GGACATGTCTAGTATTAAGGTTACCATGTATCCGCCGCCTTTCACCACTCACGGGTACTN
rJMFF040L04+ GGACATGTNTAGTATTAAGGTTACCATGTATCCGCCGCCTTTCACCACTCACGGGTACTN
rJMFF025N17+ GGACATGTCTAGTATTAAGGTTACCATGTATCCGCCGCCTTTCACCACTCACGGGTACTC
                      ____________________________________________________________
consensus GGACATGTCTAGTATTAAGGTTACCATGTATCCGCCGCCTTTCACCACTCACGGGTACTT
 
. : . : . : . : . : . :
rJMFF018H06+ TGAGGGCCAAAGGATGCTGATTTTGGGACTCACCTNTGTGGCCAAGGATACCATNTCCGC
rJMFF028L06+ TGAGGGCCAAAGGATGNTGATTTTGGGACTCACCTCTGTGGCCAAGGATACCATCTCCGC
rJMFF040L04+ TGAGGGCCAAAGGATGCTGATTTTGGGACTCACCTCTGTGGCCAAGGATACCATNTCCGC
rJMFF025N17+ TGAGGGCCAAAGGATGCTGATTTTGGGACTCACCTCTGTGGCCAAGGACACCATCTCTGC
                      ____________________________________________________________
consensus TGAGGGCCAAAGGATGCTGATTTTGGGACTCACCTCTGTGGCCAAGGATACCATCTCCGC
 
. : . : . : . : . : . :
rJMFF018H06+ CGTGGCGCCGTCCTTTGGCAAGCTTGCACCNCCAGGCTATTACTTGATNTTTGTTGTGCA
rJMFF028L06+ CGTGGCGCCGTCCTCTGGCAAGNTTGCACCACCAGGCTATTACTTGATTTTTGTTGNGCA
rJMFF040L04+ CGTGGCGCCGTCCTNTGGCAAGCTTGCACCACCAGGCTATTACTTGATCTTTGTTGTGCA
rJMFF025N17+ CGTGGCGCCATCCTCTGGCAAGCTTGCACCACCAGGCTATTACTTGATCTTTGTTGTGCA
                      ____________________________________________________________
consensus CGTGGCGCCGTCCTCTGGCAAGCTTGCACCACCAGGCTATTACTTGATCTTTGTTGTGCA
 
. : . : . : . : . : . :
rJMFF018H06+ CCGTGGCGTACCCAGCAAGGGATTGTGGGTGCATATTAAATAGAACAGAATAGAAGATAC
rJMFF028L06+ CCGTGGCGTACCCAGCAAGGGATTGTGGGTGCATATTAAATAGAACAGAATAGAAGATAC
rJMFF040L04+ CCGTGGCGTACCCAGCAAGGGATTGTGGGTGCATATTAAATAGAACAGAATAGAAGATAC
rJMFF025N17+ CCGTGGCGTACCCAGCAAGGGATTGTGGGTGCATATTAAATAGAACAGAATAGAAGAT-T
                      ____________________________________________________________
consensus CCGTGGCGTACCCAGCAAGGGATTGTGGGTGCATATTAAATAGAACAGAATAGAAGATAC
 
. : . : . : . : . : . :
rJMFF018H06+ GGGCTCGCTTGTTCAGTGTTGACAGTATTTGGGTGCAATTAGCCTTACATGCTGAT
rJMFF028L06+ GGGCTCGCTTGTTCAGTGTTGACAGTATTTGGGTGCAATTAGCCTTACATGCTGAT
rJMFF040L04+ GGGCTCGCTTGTTCAGTGTTGACAGTATTTGGGTGCAATTAGCCTTACATGCTGAT
rJMFF025N17+ GGGCTCGCTTGTTCAGTGTTGACAGTATTTGGGTGCAATTAGCCCTACATGCTGATCTAT
                      ____________________________________________________________
consensus GGGCTCGCTTGTTCAGTGTTGACAGTATTTGGGTGCAATTAGCCTTACATGCTGATCTAT
 
. : . : . : . : . : . :
rJMFF025N17+ TTGGGTGCAATTAGCCCTACATGCTGATCGAGTCATTATCGTGATTTATAGTGCAGACGA
                      ____________________________________________________________
consensus TTGGGTGCAATTAGCCCTACATGCTGATCGAGTCATTATCGTGATTTATAGTGCAGACGA
 
. : . : . : . : . : . :
rJMFF025N17+ ACTACGGTGTGAGGGGTCCCTTAGGGTGGGGAATCCAACCTTCTTGATAGAAGTATAGAA
                      ____________________________________________________________
consensus ACTACGGTGTGAGGGGTCCCTTAGGGTGGGGAATCCAACCTTCTTGATAGAAGTATAGAA
 
. : . : . : . : . : . :
rJMFF025N17+ ATGGGCATTGAATTTTTTTATTTTTGTAATCTTGTACAGAGTACCATATAATAATATATA
                      ____________________________________________________________
consensus ATGGGCATTGAATTTTTTTATTTTTGTAATCTTGTACAGAGTACCATATAATAATATATA