Previous Contig 009334:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024A06Sequence501004401 (4)gb:AF321984_17860541e-29Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds.750009334 (4)gb:AF321984_17860542e-99Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds.
JMFS022B06Sequence605009334 (4)gb:AF321984_1786054e-108Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds.
JMSF002D20Sequence337004401 (4)gb:VCA311550_17269950.001Volvox carteri f. nagariensis mRNA for metalloproteinase (VMP4 protein).727009334 (4)gb:AF321984_17860541e-98Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds.
JMSF037N16Sequence579004401 (4)gb:AF321984_17860541e-37Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds.683009334 (4)gb:AF321984_17860543e-91Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds.

Alignment

This contig is upended


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JMFS022B06- ACCCTTCTACATTGATTTTGCACATCACAAGGTTACTGGT
                      ____________________________________________________________
consensus ACCCTTCTACATTGATTTTGCACATCACAAGGTTACTGGT
 
. : . : . : . : . : . :
JMFS022B06- AGGAGAGATAGAGCCAAGCCGTTGCCATTCAAAATGGAGTCTTCAGGACCTTGGGGTTAT
                      ____________________________________________________________
consensus AGGAGAGATAGAGCCAAGCCGTTGCCATTCAAAATGGAGTCTTCAGGACCTTGGGGTTAT
 
. : . : . : . : . : . :
JMFS022B06- GCTGGTGCAAATAGTGATAACCCTAAAATTAGTGCCAAGTTTATTGCTCCTTGCTATGCG
                      ____________________________________________________________
consensus GCTGGTGCAAATAGTGATAACCCTAAAATTAGTGCCAAGTTTATTGCTCCTTGCTATGCG
 
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JMFS022B06- ATGAATAAAATAGAGATTGACACAAAGCTTCCAGTTCTTGGAGATCAAAAATGGGTAATT
                      ____________________________________________________________
consensus ATGAATAAAATAGAGATTGACACAAAGCTTCCAGTTCTTGGAGATCAAAAATGGGTAATT
 
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JMFS022B06- TGGATTTGCTCCTTCAATGTACCCATGGCACCGGGGAAGACCCGCTCAATTGTCTGTAGT
rJMSF002D20+ GGGAAGACCCGCTCAATTGTCTGTAGT
rJMFF024A06+ GGGAAGACCCGCTCAATTGTCTGTAGT
                      ____________________________________________________________
consensus TGGATTTGCTCCTTCAATGTACCCATGGCACCGGGGAAGACCCGCTCAATTGTCTGTAGT
 
. : . : . : . : . : . :
JMFS022B06- GCTCGGAACTTCTTCCAGCTCACAATGCCAGGGCCTGCCTGGTGGCAGGTATTTCCGAGA
rJMSF002D20+ GCTCGGAACTTCTTCCAGCTCACAATGCCAGGGCCTGCCTGGTGGCAGGTATTTCCGAGA
rJMSF037N16+ TTCCAGCTCACAATGCCAGGGCCTGCCTGGTGGCAGGTATTTCCGAGA
rJMFF024A06+ GCTCGGAACTTCTTCCAGCTCACAATGCCAGGGCCTGCCTGGTGGCAGGTATTTCCGAGA
                      ____________________________________________________________
consensus GCTCGGAACTTCTTCCAGCTCACAATGCCAGGGCCTGCCTGGTGGCAGGTATTTCCGAGA
 
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JMFS022B06- TGGCAAGAGCATTGGACTTCAAATAAGGTGTACGATGGAGATATGATTGTGCTTCAAGGT
rJMSF002D20+ TGGCAAGAGCATTGGACTTCAAATAAGGTGTACGATGGAGATATGATTGTGCTTCAAGGT
rJMSF037N16+ TGGCAAGAGCATTGGACTTCAAATAAGGTGTACGATGGAGATATGATTGTGCTTCAAGGT
rJMFF024A06+ TGGCAAGAGCATTGGACTTCAAATAAGGTGTACGATGGAGATATGATTGTGCTTCAAGGT
                      ____________________________________________________________
consensus TGGCAAGAGCATTGGACTTCAAATAAGGTGTACGATGGAGATATGATTGTGCTTCAAGGT
 
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JMFS022B06- CAAGAAAAGATCTTCCTTTCAAAGTCGAGGGAGTCCTCTGCAGATATTAATAAAGAGTAT
rJMSF002D20+ CAAGAAAAGATCTTCCTTTCAAAGTCGAGGGAGTCCTCTGCAGATATTAATAAAGAGTAT
rJMSF037N16+ CAAGAAAAGATCTTCCTTTCAAAGTCGAGGGAGTCCTCTGCAGATATTAATAAAGAGTAT
rJMFF024A06+ CAAGAAAAGATCTTCCTTTCAAAGTCGAGGGAGTCCTCTGCAGATATTAATAAAGAGTAT
                      ____________________________________________________________
consensus CAAGAAAAGATCTTCCTTTCAAAGTCGAGGGAGTCCTCTGCAGATATTAATAAAGAGTAT
 
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JMFS022B06- ACAAAACTCACGTTCACGCCTACACAAGCTGACCGCTTTGTCTTGGCGTTTCGGAATTGG
rJMSF002D20+ ACAAAACTCACGTTCACGCCTACACAAGCTGACCGCTTTGTCTTGGCGTTTCGGAATTGG
rJMSF037N16+ ACAAAACTCACGTTCACGCCTACACAAGCTGACCGCTTTGTCTTGGCGTTTCGGAATTGG
rJMFF024A06+ ACAAAACTCACGTTCACGCCTACACAAGCTGACCGCTTTGTCTTGGCGTTTCGGAATTGG
                      ____________________________________________________________
consensus ACAAAACTCACGTTCACGCCTACACAAGCTGACCGCTTTGTCTTGGCGTTTCGGAATTGG
 
. : . : . : . : . : . :
JMFS022B06- CTTAGGCGACATGGAAATGGTCAGCCAGAGTGGTTCGGTAGCGTTGAGCAACTACCGTTG
rJMSF002D20+ CTTAGGCGACATGGAAATGGTCAGCCAGAGTGGTTCGGTAGCGTTGAGCAACTACCGTTG
rJMSF037N16+ CTTAGGCGACATGGAAATGGTCAGCCAGAGTGGTTCGGTAGCGTTGAGCAACTACCGTTG
rJMFF024A06+ CTTAGGCGACATGGAAATGGTCAGCCAGAGTGGTTCGGTAGCGTTGAGCAACTACCGTTG
                      ____________________________________________________________
consensus CTTAGGCGACATGGAAATGGTCAGCCAGAGTGGTTCGGTAGCGTTGAGCAACTACCGTTG
 
. : . : . : . : . : . :
JMFS022B06- CCATCTACCGTCTTGTCCAAACGTC
rJMSF002D20+ CCATCTACCGTCTTGTCCAAACGTCAGATGCTGGACAGATATGAGCAGCATACACTGAAA
rJMSF037N16+ CCATCTACCGTCTTGTCCAAACGTCAGATGCTGGACAGATATGAGCAGCATACACTGAAA
rJMFF024A06+ CCATCTACCGTCTTGTCCAAACGTCAGATGCTGGACAGATATGAGCAGCATACACTGAAA
                      ____________________________________________________________
consensus CCATCTACCGTCTTGTCCAAACGTCAGATGCTGGACAGATATGAGCAGCATACACTGAAA
 
. : . : . : . : . : . :
rJMSF002D20+ TGCTCGTCTTGTAAAAGCGCATATAAAACATTTGAGACATTGCAAAAGTTTTTGATTGGT
rJMSF037N16+ TGCTCGTCTTGTAAAAGCGCATATAAAACATTTGAGACATTGCAAAAGTTTTTGATTGGT
rJMFF024A06+ TGCTCGTCTTGTAAAAGCGCATATAAAACATTTGAGACATTGCAAAAGTTTTTGATTGGT
                      ____________________________________________________________
consensus TGCTCGTCTTGTAAAAGCGCATATAAAACATTTGAGACATTGCAAAAGTTTTTGATTGGT
 
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rJMSF002D20+ GTGGTCGTTTGCTGTTCTGCAACAGCCGGAATCCCTTCTGACATCAGATACCGAATTATT
rJMSF037N16+ GTGGTCGTTTGCTGTTCTGCAACAGCCGGAATCCCTTCTGACATCAGATACCGAATTATT
rJMFF024A06+ GTGGTCGTTTGCTGTTCTGCAACAGCCGGAATCCCTTCTGACATCAGATACCGAATTATT
                      ____________________________________________________________
consensus GTGGTCGTTTGCTGTTCTGCAACAGCCGGAATCCCTTCTGACATCAGATACCGAATTATT
 
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rJMSF002D20+ TTGGGCGCCCTGGCGATTGTAAGTGCTGGCTTGGCATACACCTTATTTGAACTCCAGAAA
rJMSF037N16+ TTGGGCGCCCTGGCGATTGTAAGTGCTGGCTTGGCATACACCTTATTTGAACTCCAGAAA
rJMFF024A06+ TTGGGCGCCCTGGCGATTGTAAGTGCTGGCTTGGCATACACCTTATTTGAACTCCAGAAA
                      ____________________________________________________________
consensus TTGGGCGCCCTGGCGATTGTAAGTGCTGGCTTGGCATACACCTTATTTGAACTCCAGAAA
 
. : . : . : . : . : . :
rJMSF002D20+ AATTTTGTTTTCGTTGATTATGTACATGCTGAAATCGAAGATTAAATAGTCAAAGAAATT
rJMSF037N16+ AATTTTGTTTTCGTTGATTATGTACATGCTGAAATCGAAGATTAAATAGTCAAAGAAATT
rJMFF024A06+ AATTTTGTTTTCGTTGATTATGTACATGCTGAAATCGAAGATTAAATAGTCAAAGAAATT
                      ____________________________________________________________
consensus AATTTTGTTTTCGTTGATTATGTACATGCTGAAATCGAAGATTAAATAGTCAAAGAAATT
 
. : . : . : . : . : . :
rJMSF002D20+ CGACTGGAATAGGATTTAGAACTGTAGCAGCATATATAAGTTGAGTAGCTTCCACGTGTA
rJMSF037N16+ CGACTGGAATAGGATTTAGAACTGTAGCAGCATATATAAGTTGAGTAGCTTCCACGTGTA
rJMFF024A06+ CGACTGGAATAGGATTTAGAACTGTAGCAGCATATATAAGTTGAGTAGCTTCCACGTGTA
                      ____________________________________________________________
consensus CGACTGGAATAGGATTTAGAACTGTAGCAGCATATATAAGTTGAGTAGCTTCCACGTGTA
 
. : . : . : . : . : . :
rJMSF002D20+ AAACACGCATATATAGTATGTATATGTTACAGATT
rJMSF037N16+ AAACACGCATATATAGTATGTATATGTTACAGATT
rJMFF024A06+ AAACACGCATATATAGTATGTATATGTTACAGATTTAGATTTTACACACGTATATATACA
                      ____________________________________________________________
consensus AAACACGCATATATAGTATGTATATGTTACAGATTTAGATTTTACACACGTATATATACA