Previous Contig 009280:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022P20Sequence544006356 (4)gb:AY099728_15767538e-19Arabidopsis thaliana putative protein (At4g35760) mRNA, complete cds.>gb:AY12890767009280 (3)gb:AY099728_15767533e-43Arabidopsis thaliana putative protein (At4g35760) mRNA, complete cds.>gb:AY12890
JMFF038M04Sequence612006356 (4)gb:AY099728_15767531e-18Arabidopsis thaliana putative protein (At4g35760) mRNA, complete cds.>gb:AY12890766009280 (3)gb:AY099728_15767534e-43Arabidopsis thaliana putative protein (At4g35760) mRNA, complete cds.>gb:AY12890
JMSF019E02Sequence313006356 (4)742009280 (3)gb:AY099728_15767533e-61Arabidopsis thaliana putative protein (At4g35760) mRNA, complete cds.>gb:AY12890

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019E02+ A
                      ____________________________________________________________
consensus A
 
. : . : . : . : . : . :
rJMSF019E02+ AGAGGCTAGCGGGCGATTTGTTTTACCTGGCACAACTACTTCTATGGCTGCTGCGAGTGC
                      ____________________________________________________________
consensus AGAGGCTAGCGGGCGATTTGTTTTACCTGGCACAACTACTTCTATGGCTGCTGCGAGTGC
 
. : . : . : . : . : . :
rJMSF019E02+ ATACTTTTTGTACATCCTAAGTACGAGATTCCCCGGGGAGTGGTGTTTATATTGTTTAAT
                      ____________________________________________________________
consensus ATACTTTTTGTACATCCTAAGTACGAGATTCCCCGGGGAGTGGTGTTTATATTGTTTAAT
 
. : . : . : . : . : . :
rJMSF019E02+ ATCTGCTGTCTTATCCTTCAGTTTGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
rJMFF038M04+ CCTTCAGTTNGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
rJMFF022P20+ CCTTCAGTTNGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
                      ____________________________________________________________
consensus ATCTGCTGTCTTATCCTTCAGTTTGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
 
. : . : . : . : . : . :
rJMSF019E02+ GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
rJMFF038M04+ GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
rJMFF022P20+ GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
                      ____________________________________________________________
consensus GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
 
. : . : . : . : . : . :
rJMSF019E02+ CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
rJMFF038M04+ CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
rJMFF022P20+ CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
                      ____________________________________________________________
consensus CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
 
. : . : . : . : . : . :
rJMSF019E02+ TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
rJMFF038M04+ TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
rJMFF022P20+ TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
                      ____________________________________________________________
consensus TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
 
. : . : . : . : . : . :
rJMSF019E02+ AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
rJMFF038M04+ AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
rJMFF022P20+ AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
                      ____________________________________________________________
consensus AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
 
. : . : . : . : . : . :
rJMSF019E02+ GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
rJMFF038M04+ GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
rJMFF022P20+ GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
                      ____________________________________________________________
consensus GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
 
. : . : . : . : . : . :
rJMSF019E02+ GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
rJMFF038M04+ GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
rJMFF022P20+ GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
                      ____________________________________________________________
consensus GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
 
. : . : . : . : . : . :
rJMSF019E02+ GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
rJMFF038M04+ GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
rJMFF022P20+ GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
                      ____________________________________________________________
consensus GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
 
. : . : . : . : . : . :
rJMSF019E02+ GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
rJMFF038M04+ GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
rJMFF022P20+ GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
                      ____________________________________________________________
consensus GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
 
. : . : . : . : . : . :
rJMSF019E02+ GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
rJMFF038M04+ GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
rJMFF022P20+ GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
                      ____________________________________________________________
consensus GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
 
. : . : . : . : . : . :
rJMSF019E02+ TGTAAAGTAGTTCACCACTTT
rJMFF038M04+ TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
rJMFF022P20+ TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
                      ____________________________________________________________
consensus TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
 
. : . : . : . : . : . :
rJMFF038M04+ GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
rJMFF022P20+ GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
                      ____________________________________________________________
consensus GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
 
. : . : . : . : . : . :
rJMFF038M04+ TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT
rJMFF022P20+ TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT
                      ____________________________________________________________
consensus TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT