Previous Contig 009221:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021I14Sequence606001082 (2)gb:AP005396_18510811e-17Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P063748009221 (2)pir|H86295|H862951e-44hypothetical protein T24D18.20 [imported] - Arabidopsis thaliana>gb:AE005172_890
JMSF021K06Sequence686001082 (2)gb:AP005396_18510817e-18Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P063779009221 (2)pir|H86295|H862958e-58hypothetical protein T24D18.20 [imported] - Arabidopsis thaliana>gb:AE005172_890

Alignment

This contig is upended


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rJMSF021K06+ TTGCGACAGAGGTAGCTGATGCTTTGGCTTATCTGC
                      ____________________________________________________________
consensus TTGCGACAGAGGTAGCTGATGCTTTGGCTTATCTGC
 
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rJMSF021K06+ ATTCGTCGTCCTCCATTCCCATCTTACATCGCGACATCAAGTCCAGCAATATCCTTCTGG
rJMFF021I14+ GACATCAAGTCCAGCAATATCCTTCTGG
                      ____________________________________________________________
consensus ATTCGTCGTCCTCCATTCCCATCTTACATCGCGACATCAAGTCCAGCAATATCCTTCTGG
 
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rJMSF021K06+ ACGAGAAGTACCGAGCTAAAGTGTCAGATTTTGGAACTTCGAAGA-CCATTGCCATTGAT
rJMFF021I14+ ACGAGAAGTACCGAGCTAAAGTGTCAGATTTTGGAACTTCGAAGACCCATTGCCATTGAT
                      ____________________________________________________________
consensus ACGAGAAGTACCGAGCTAAAGTGTCAGATTTTGGAACTTCGAAGACCCATTGCCATTGAT
 
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rJMSF021K06+ CAGACTCACGTCACTACTCAAGTGAAAGGAACGTTTGGCTACTTGGATCCTGAGTATTTT
rJMFF021I14+ CAGACTCACGTCACTACTCAAGTGAAAGGAACGTTTGGCTACTTGGATCCTGAGTATTTT
                      ____________________________________________________________
consensus CAGACTCACGTCACTACTCAAGTGAAAGGAACGTTTGGCTACTTGGATCCTGAGTATTTT
 
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rJMSF021K06+ CAATCCAGTCAATTTACTGAAAAGAGTGACGTCTATAGTTTCGGAGTCGTATTGGTTGAA
rJMFF021I14+ CAATCCAGTCAATTTACTGAAAAGAGTGACGTCTATAGTTTCGGAGTCGTATTGGTTGAA
                      ____________________________________________________________
consensus CAATCCAGTCAATTTACTGAAAAGAGTGACGTCTATAGTTTCGGAGTCGTATTGGTTGAA
 
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rJMSF021K06+ CTTATGACAGGAAACAAGGCAATTTCTTTTGCGACAAATGAAGAAGACAGAAGTCTTGCC
rJMFF021I14+ CTTATGACAGGAAACAAGGCAATTTCTTTTGCGACAAATGAAGAAGACAGAAGTCTTGCC
                      ____________________________________________________________
consensus CTTATGACAGGAAACAAGGCAATTTCTTTTGCGACAAATGAAGAAGACAGAAGTCTTGCC
 
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rJMSF021K06+ ACACGATTCCTTTCGGCTATGGAGGGGAATCGACTCTTCAAGATTTTTGACAAACAAGTG
rJMFF021I14+ ACACGATTCCTTTCGGCTATGGAGGGGAATCGACTCTTCAAGATTTTTGACAAACAAGTG
                      ____________________________________________________________
consensus ACACGATTCCTTTCGGCTATGGAGGGGAATCGACTCTTCAAGATTTTTGACAAACAAGTG
 
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rJMSF021K06+ TTGGAACAAGGCAAAAAGGAAGATCTCATGGTAGTTGCAAACCTTAGTAGGAGATGCTTG
rJMFF021I14+ TTGGAACAAGGCAAAAAGGAAGATCTCATGGTAGTTGCAAACCTTAGTAGGAGATGCTTG
                      ____________________________________________________________
consensus TTGGAACAAGGCAAAAAGGAAGATCTCATGGTAGTTGCAAACCTTAGTAGGAGATGCTTG
 
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rJMSF021K06+ GACTTGAATGGGAAAAAGAGGCCGACCATGAAAGAAGTGGTATCAGAACTAGAAAAGGTT
rJMFF021I14+ GACTTGAATGGGAAAAAGAGGCCGACCATGAAAGAAGTGGTATCAGAACTAGAAAAGGTT
                      ____________________________________________________________
consensus GACTTGAATGGGAAAAAGAGGCCGACCATGAAAGAAGTGGTATCAGAACTAGAAAAGGTT
 
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rJMSF021K06+ AAATCTGGCACAACTTCATCCGAGACAAAGAATTTTGAGGGCAAAAGATTATTGGAGATT
rJMFF021I14+ AAATCTGGCACAACTTCATCCGAGACAAAGAATTTTGAGGGCAAAAGATTATTGGAGATT
                      ____________________________________________________________
consensus AAATCTGGCACAACTTCATCCGAGACAAAGAATTTTGAGGGCAAAAGATTATTGGAGATT
 
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rJMSF021K06+ GAACCAACGATATTTTCTGAAACTAATTATACATGGACAACCACAGAGGAAAATTGCAGT
rJMFF021I14+ GAACCAACGATATTTTCTGAAACTAATTATACATGGACAACCACAGAGGAAAATTGCAGT
                      ____________________________________________________________
consensus GAACCAACGATATTTTCTGAAACTAATTATACATGGACAACCACAGAGGAAAATTGCAGT
 
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rJMSF021K06+ ACTACATCACTAGACGCACACCCGTTATTGTTTGATACATAAACTGTGACATTGTTTAAT
rJMFF021I14+ ACTACATCACTAGACGCACACCCGTTATTGTTTGATACATAAACTGTGACATTGTTTAAT
                      ____________________________________________________________
consensus ACTACATCACTAGACGCACACCCGTTATTGTTTGATACATAAACTGTGACATTGTTTAAT
 
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rJMSF021K06+ TAATAGTATTTTTGACATGCATTATATAACTTTATGTTGTTGTTGTTAAACTAGTATTTG
rJMFF021I14+ TAATAGTATTTTTGACATGCATTATATAACTTTATGTTGTTGTTGTTAAACTAGTATTTG
                      ____________________________________________________________
consensus TAATAGTATTTTTGACATGCATTATATAACTTTATGTTGTTGTTGTTAAACTAGTATTTG
 
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rJMSF021K06+ TCCCGTGCGATGCAC
rJMFF021I14+ TCCCGTGCGATGCACGAGAAATATGTTATAAAAATATACCTTATATGAGGTTTATTCATA
                      ____________________________________________________________
consensus TCCCGTGCGATGCACGAGAAATATGTTATAAAAATATACCTTATATGAGGTTTATTCATA