clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF016I06 | Sequence | 603 | 000846 (2) | gb:AY086794_1571837 | 4e-39 | Arabidopsis thaliana clone 27758 mRNA, complete sequence. | 804 | 008968 (2) | gb:AB017067_1513418 | 1e-86 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.>gb:AY059846_1564 |
JMFF034M19 | Sequence | 499 | 000846 (2) | gb:AY086794_1571837 | 3e-28 | Arabidopsis thaliana clone 27758 mRNA, complete sequence. | 663 | 008968 (2) | gb:AB017067_1513418 | 3e-60 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.>gb:AY059846_1564 |
This contig is upended
. : . : . : . : . : . :
rJMFF016I06+ TTTAGTTTCTTGAAGGGGATCACC
____________________________________________________________
consensus TTTAGTTTCTTGAAGGGGATCACC
. : . : . : . : . : . :
rJMFF016I06+ TTGTTTACTTTGATTGTTCTAATTGGTACTGGCTGGTCATTCTTGAAGCCTTATTTGCAA
____________________________________________________________
consensus TTGTTTACTTTGATTGTTCTAATTGGTACTGGCTGGTCATTCTTGAAGCCTTATTTGCAA
. : . : . : . : . : . :
rJMFF016I06+ GATAAGGAGAAGAAGGTGTTGATTGTTGTGATTCCCTTGCAAGTTGTGGCTAATGTGGCT
____________________________________________________________
consensus GATAAGGAGAAGAAGGTGTTGATTGTTGTGATTCCCTTGCAAGTTGTGGCTAATGTGGCT
. : . : . : . : . : . :
rJMFF034M19+ GGTAGTGATTGATGAGACAGGGCCATTTGGTGAGAGTTCATCTACATGGAAGCAGATT
rJMFF016I06+ CAGGTAGTGATTGATGAGACAGGGCCATTTGGTGAGAGTTCATCTACATGGAAGCAGATT
____________________________________________________________
consensus CAGGTAGTGATTGATGAGACAGGGCCATTTGGTGAGAGTTCATCTACATGGAAGCAGATT
. : . : . : . : . : . :
rJMFF034M19+ TTCTTGCTTGTTGACATTGTGTGTTGTTGTGCTGTATTGTTCCCGATTGTGTGGTCGATT
rJMFF016I06+ TTCTTGCTTGTTGACATTGTGTGTTGTTGTGCTGTATTGTTCCCGATTGTGTGGTCGATT
____________________________________________________________
consensus TTCTTGCTTGTTGACATTGTGTGTTGTTGTGCTGTATTGTTCCCGATTGTGTGGTCGATT
. : . : . : . : . : . :
rJMFF034M19+ AAGAACTTGCGTGAGGCTGCCAAGACGGATGGGAAGGCTGCCGTGAATTTGATGAAGTTG
rJMFF016I06+ AAGAACTTGCGTGAGGCTGCCAAGACGGATGGGAAGGCTGCCGTGAATTTGATGAAGTTG
____________________________________________________________
consensus AAGAACTTGCGTGAGGCTGCCAAGACGGATGGGAAGGCTGCCGTGAATTTGATGAAGTTG
. : . : . : . : . : . :
rJMFF034M19+ ACGTTGTTTAGGCAGTACTATATCATTGTTATATGCTACATCTACTTTACGAGGGTTGTG
rJMFF016I06+ ACGTTGTTTAGGCAGTACTATATCATTGTTATATGCTACATCTACTTTACGAGGGTTGTG
____________________________________________________________
consensus ACGTTGTTTAGGCAGTACTATATCATTGTTATATGCTACATCTACTTTACGAGGGTTGTG
. : . : . : . : . : . :
rJMFF034M19+ GTTTATGCTCTCGAGACTATTACTTCCTACCGATATCAGTGGACAAGTGTGGTCGCCTCT
rJMFF016I06+ GTTTATGCTCTCGAGACTATTACTTCCTACCGATATCAGTGGACAAGTGTGGTCGCCTCT
____________________________________________________________
consensus GTTTATGCTCTCGAGACTATTACTTCCTACCGATATCAGTGGACAAGTGTGGTCGCCTCT
. : . : . : . : . : . :
rJMFF034M19+ GAATTAGCCACACTTGCGTTCTACGTTTTTACTGGGTTCAACTTTAGGCCTAAGTCTCAC
rJMFF016I06+ GAATTAGCCACACTTGCGTTCTACGTTTTTACTGGGTTCAACTTTAGGCCTAAGTCTCAC
____________________________________________________________
consensus GAATTAGCCACACTTGCGTTCTACGTTTTTACTGGGTTCAACTTTAGGCCTAAGTCTCAC
. : . : . : . : . : . :
rJMFF034M19+ AACCCTTATTTTGCGATCGATGAGGATGAGGAAGAAGCTGCTGCTGAGGCACTTAAGCTC
rJMFF016I06+ AACCCTTATTTTGCGATCGATGAGGATGAGGAAGAAGCTGCTGCTGAGGCACTTAAGCTC
____________________________________________________________
consensus AACCCTTATTTTGCGATCGATGAGGATGAGGAAGAAGCTGCTGCTGAGGCACTTAAGCTC
. : . : . : . : . : . :
rJMFF034M19+ GAGGATGAATTTGAATTGTGAGTAAATTTTGGCTAGCATTAATGAAGATTGAAAAGTGCT
rJMFF016I06+ GAGGATGAATTTGAATTGTGAGTAAATTTTGGCTAGCATTAATGAAGATTGAAAAGTGCT
____________________________________________________________
consensus GAGGATGAATTTGAATTGTGAGTAAATTTTGGCTAGCATTAATGAAGATTGAAAAGTGCT
. : . : . : . : . : . :
rJMFF034M19+ GTGATATGTCAATTGCCTTGTAACCTTTTTGAATCAATTCTCCTAGTTTCTTTATGCATA
rJMFF016I06+ GTGATATGTCAATTGCCTTGTAACCTTTTTGAATCAATTCTCCTAGTTTCTTTATGCATA
____________________________________________________________
consensus GTGATATGTCAATTGCCTTGTAACCTTTTTGAATCAATTCTCCTAGTTTCTTTATGCATA
. : . : . : . : . : . :
rJMFF034M19+ CCACATCCCCCCCTTGTACTTTGTTCCATATACAAAATCCTATGATAAGTGTCTTGTTTG
rJMFF016I06+ CCACATCCCCCCCTTGTACTTTGTTCCATATACAAAATCCTATGATAAGTGTCTTGTTTG
____________________________________________________________
consensus CCACATCCCCCCCTTGTACTTTGTTCCATATACAAAATCCTATGATAAGTGTCTTGTTTG
. : . : . : . : . : . :
rJMFF034M19+ TCTGTTTCAGTATCTCATTGTTGAAAAACCTGTTGGGCTATTAGATGTGTTATACTTA
rJMFF016I06+ TCTGTTTCAGTATCTCATTGTTGAAAAACCTGTTGGGCTATTAGATGTGTTATACTTATG
____________________________________________________________
consensus TCTGTTTCAGTATCTCATTGTTGAAAAACCTGTTGGGCTATTAGATGTGTTATACTTATG