Previous Contig 008968:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016I06Sequence603000846 (2)gb:AY086794_15718374e-39Arabidopsis thaliana clone 27758 mRNA, complete sequence.804008968 (2)gb:AB017067_15134181e-86Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.>gb:AY059846_1564
JMFF034M19Sequence499000846 (2)gb:AY086794_15718373e-28Arabidopsis thaliana clone 27758 mRNA, complete sequence.663008968 (2)gb:AB017067_15134183e-60Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.>gb:AY059846_1564

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016I06+ TTTAGTTTCTTGAAGGGGATCACC
                      ____________________________________________________________
consensus TTTAGTTTCTTGAAGGGGATCACC
 
. : . : . : . : . : . :
rJMFF016I06+ TTGTTTACTTTGATTGTTCTAATTGGTACTGGCTGGTCATTCTTGAAGCCTTATTTGCAA
                      ____________________________________________________________
consensus TTGTTTACTTTGATTGTTCTAATTGGTACTGGCTGGTCATTCTTGAAGCCTTATTTGCAA
 
. : . : . : . : . : . :
rJMFF016I06+ GATAAGGAGAAGAAGGTGTTGATTGTTGTGATTCCCTTGCAAGTTGTGGCTAATGTGGCT
                      ____________________________________________________________
consensus GATAAGGAGAAGAAGGTGTTGATTGTTGTGATTCCCTTGCAAGTTGTGGCTAATGTGGCT
 
. : . : . : . : . : . :
rJMFF034M19+ GGTAGTGATTGATGAGACAGGGCCATTTGGTGAGAGTTCATCTACATGGAAGCAGATT
rJMFF016I06+ CAGGTAGTGATTGATGAGACAGGGCCATTTGGTGAGAGTTCATCTACATGGAAGCAGATT
                      ____________________________________________________________
consensus CAGGTAGTGATTGATGAGACAGGGCCATTTGGTGAGAGTTCATCTACATGGAAGCAGATT
 
. : . : . : . : . : . :
rJMFF034M19+ TTCTTGCTTGTTGACATTGTGTGTTGTTGTGCTGTATTGTTCCCGATTGTGTGGTCGATT
rJMFF016I06+ TTCTTGCTTGTTGACATTGTGTGTTGTTGTGCTGTATTGTTCCCGATTGTGTGGTCGATT
                      ____________________________________________________________
consensus TTCTTGCTTGTTGACATTGTGTGTTGTTGTGCTGTATTGTTCCCGATTGTGTGGTCGATT
 
. : . : . : . : . : . :
rJMFF034M19+ AAGAACTTGCGTGAGGCTGCCAAGACGGATGGGAAGGCTGCCGTGAATTTGATGAAGTTG
rJMFF016I06+ AAGAACTTGCGTGAGGCTGCCAAGACGGATGGGAAGGCTGCCGTGAATTTGATGAAGTTG
                      ____________________________________________________________
consensus AAGAACTTGCGTGAGGCTGCCAAGACGGATGGGAAGGCTGCCGTGAATTTGATGAAGTTG
 
. : . : . : . : . : . :
rJMFF034M19+ ACGTTGTTTAGGCAGTACTATATCATTGTTATATGCTACATCTACTTTACGAGGGTTGTG
rJMFF016I06+ ACGTTGTTTAGGCAGTACTATATCATTGTTATATGCTACATCTACTTTACGAGGGTTGTG
                      ____________________________________________________________
consensus ACGTTGTTTAGGCAGTACTATATCATTGTTATATGCTACATCTACTTTACGAGGGTTGTG
 
. : . : . : . : . : . :
rJMFF034M19+ GTTTATGCTCTCGAGACTATTACTTCCTACCGATATCAGTGGACAAGTGTGGTCGCCTCT
rJMFF016I06+ GTTTATGCTCTCGAGACTATTACTTCCTACCGATATCAGTGGACAAGTGTGGTCGCCTCT
                      ____________________________________________________________
consensus GTTTATGCTCTCGAGACTATTACTTCCTACCGATATCAGTGGACAAGTGTGGTCGCCTCT
 
. : . : . : . : . : . :
rJMFF034M19+ GAATTAGCCACACTTGCGTTCTACGTTTTTACTGGGTTCAACTTTAGGCCTAAGTCTCAC
rJMFF016I06+ GAATTAGCCACACTTGCGTTCTACGTTTTTACTGGGTTCAACTTTAGGCCTAAGTCTCAC
                      ____________________________________________________________
consensus GAATTAGCCACACTTGCGTTCTACGTTTTTACTGGGTTCAACTTTAGGCCTAAGTCTCAC
 
. : . : . : . : . : . :
rJMFF034M19+ AACCCTTATTTTGCGATCGATGAGGATGAGGAAGAAGCTGCTGCTGAGGCACTTAAGCTC
rJMFF016I06+ AACCCTTATTTTGCGATCGATGAGGATGAGGAAGAAGCTGCTGCTGAGGCACTTAAGCTC
                      ____________________________________________________________
consensus AACCCTTATTTTGCGATCGATGAGGATGAGGAAGAAGCTGCTGCTGAGGCACTTAAGCTC
 
. : . : . : . : . : . :
rJMFF034M19+ GAGGATGAATTTGAATTGTGAGTAAATTTTGGCTAGCATTAATGAAGATTGAAAAGTGCT
rJMFF016I06+ GAGGATGAATTTGAATTGTGAGTAAATTTTGGCTAGCATTAATGAAGATTGAAAAGTGCT
                      ____________________________________________________________
consensus GAGGATGAATTTGAATTGTGAGTAAATTTTGGCTAGCATTAATGAAGATTGAAAAGTGCT
 
. : . : . : . : . : . :
rJMFF034M19+ GTGATATGTCAATTGCCTTGTAACCTTTTTGAATCAATTCTCCTAGTTTCTTTATGCATA
rJMFF016I06+ GTGATATGTCAATTGCCTTGTAACCTTTTTGAATCAATTCTCCTAGTTTCTTTATGCATA
                      ____________________________________________________________
consensus GTGATATGTCAATTGCCTTGTAACCTTTTTGAATCAATTCTCCTAGTTTCTTTATGCATA
 
. : . : . : . : . : . :
rJMFF034M19+ CCACATCCCCCCCTTGTACTTTGTTCCATATACAAAATCCTATGATAAGTGTCTTGTTTG
rJMFF016I06+ CCACATCCCCCCCTTGTACTTTGTTCCATATACAAAATCCTATGATAAGTGTCTTGTTTG
                      ____________________________________________________________
consensus CCACATCCCCCCCTTGTACTTTGTTCCATATACAAAATCCTATGATAAGTGTCTTGTTTG
 
. : . : . : . : . : . :
rJMFF034M19+ TCTGTTTCAGTATCTCATTGTTGAAAAACCTGTTGGGCTATTAGATGTGTTATACTTA
rJMFF016I06+ TCTGTTTCAGTATCTCATTGTTGAAAAACCTGTTGGGCTATTAGATGTGTTATACTTATG
                      ____________________________________________________________
consensus TCTGTTTCAGTATCTCATTGTTGAAAAACCTGTTGGGCTATTAGATGTGTTATACTTATG