| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014O14 | Sequence | 581 | 005102 (5) | pir|T47595|T47595 | 1e-27 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido | 776 | 008899 (4) | pir|T47595|T47595 | 2e-71 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido |
| JMSF009E09 | Sequence | 491 | 005102 (5) | pir|T47595|T47595 | 2e-15 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido | 796 | 008899 (4) | pir|T47595|T47595 | 1e-72 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido |
| JMSF009L10 | Sequence | 472 | 005102 (5) | pir|T47595|T47595 | 6e-07 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido | 764 | 008899 (4) | pir|T47595|T47595 | 2e-68 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido |
| JMSF027F19 | Sequence | 637 | 005102 (5) | pir|T47595|T47595 | 3e-36 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido | 755 | 008899 (4) | pir|T47595|T47595 | 8e-71 | RING finger protein T12E18.50 - Arabidopsis thaliana>gb:ATT12E18_1554324 Arabido |
This contig is upended
. : . : . : . : . : . :
rJMSF009E09+ ATATATGAGGATGTGTCTTGGAANGAGGCTCT
____________________________________________________________
consensus ATATATGAGGATGTGTCTTGGAANGAGGCTCT
. : . : . : . : . : . :
rJMSF009E09+ TCCTGGTGCATCATGCCATGCGAGCATTTCGTGCAAATAATGTTGAAAGTGCAAAATCAA
rJMSF027F19+ TGCATCATGCCATGCGAGCATTTCGTGCAAATAATGGTGAAAGTGCAAAATCAA
rJMSF009L10+ TGCATCATGCCATGCGAGCA-TTCGTGCAAATAATGTTGAAAGTGCAAAATCAA
rJMFF014O14+ TGCATCATGCCATGCGAGCATTTCGTGCAAATAATGTTGAAAGTGCAAAATCAA
____________________________________________________________
consensus TCCTGGTGCATCATGCCATGCGAGCATTTCGTGCAAATAATGTTGAAAGTGCAAAATCAA
. : . : . : . : . : . :
rJMSF009E09+ GACTTAGCATATGTGCAGAAGATATTCGAGAACAAGTAGAAAGAATGGGAAATACATCAG
rJMSF027F19+ GACTTAGCATATGTGCAGAAGATATTCGAGAACAAGTAGAAAGAATGGGAAATACATCAG
rJMSF009L10+ GACTTAGCATATGTGCAGAAGATATTCGAGAACAAGTAGAAAGAATGGGAAATACATCAG
rJMFF014O14+ GACTTAGCATATGTGCAGAAGATATTCGAGAACAAGTAGAAAGAATGGGAAATACATCAG
____________________________________________________________
consensus GACTTAGCATATGTGCAGAAGATATTCGAGAACAAGTAGAAAGAATGGGAAATACATCAG
. : . : . : . : . : . :
rJMSF009E09+ AACTGTGCTCACAACTTGGAGCAGTTCTGGGTATGCTTGGTGATTGCTGCCGAGCTACAG
rJMSF027F19+ AACTGTGCTCACAACTTGGAGCAGTTCTGGGTATGCTTGGTGATTGCTGCCGAGCTACAG
rJMSF009L10+ AACTGTGCTCACAACTTGGAGCAGTTCTGGGTATGCTTGGTGATTGCTGCCGAGCTACAG
rJMFF014O14+ AACTGTGCTCACAACTTGGAGCAGTTCTGGGTATGCTTGGTGATTGCTGCCGAGCTACAG
____________________________________________________________
consensus AACTGTGCTCACAACTTGGAGCAGTTCTGGGTATGCTTGGTGATTGCTGCCGAGCTACAG
. : . : . : . : . : . :
rJMSF009E09+ GAGATGCCGCTTCTGCAGTCAAATATTTTGAAGAGAGTGTCAATTTTCTTTTAAAAGTGC
rJMSF027F19+ GAGATGCCGCTTCTGCAGTCAAATATTTTGAAGAGAGTGTCAATTTTCTTTTAAAAGTGC
rJMSF009L10+ GAGATGCCGCTTCTGCAGTCAAATATTTTGAAGAGAGTGTCAATTTTCTTTTAAAAGTGC
rJMFF014O14+ GAGATGCCGCTTCTGCAGTCAAATATTTTGAAGAGAGTGTCAATTTTCTTTTAAAAGTGC
____________________________________________________________
consensus GAGATGCCGCTTCTGCAGTCAAATATTTTGAAGAGAGTGTCAATTTTCTTTTAAAAGTGC
. : . : . : . : . : . :
rJMSF009E09+ CTAAAGATGATTTAGAGATAACACACACTCTTTCTGTCTCTCTAAATAAAATTGGAGACC
rJMSF027F19+ CTAAAGATGATTTAGAGATAACACACACTCTTTCTGTCTCTCTAAATAAAATTGGAGACC
rJMSF009L10+ CTAAAGATGATTTAGAGATAACACACACTCTTTCTGTCTCTCTAAATAAAATTGGAGACC
rJMFF014O14+ CTAAAGATGATTTAGAGATAACACACACTCTTTCTGTCTCTCTAAATAAAATTGGAGACC
____________________________________________________________
consensus CTAAAGATGATTTAGAGATAACACACACTCTTTCTGTCTCTCTAAATAAAATTGGAGACC
. : . : . : . : . : . :
rJMSF009E09+ TTAAATACTATGATGAAGATTTGCAAGCTGCAAGATCATATTATTTTCAAGCATTGGATA
rJMSF027F19+ TTAAATACTATGATGAAGATTTGCAAGCTGCAAGATCATATTATTTTCAAGCATTGGATA
rJMSF009L10+ TTAAATACTATGATGAAGATTTGCAAGCTGCAAGATCATATTATTTTCAAGCATTGGATA
rJMFF014O14+ TTAAATACTATGATGAAGATTTGCAAGCTGCAAGATCATATTATTTTCAAGCATTGGATA
____________________________________________________________
consensus TTAAATACTATGATGAAGATTTGCAAGCTGCAAGATCATATTATTTTCAAGCATTGGATA
. : . : . : . : . : . :
rJMSF009E09+ TTCGCCGCAATGCCATCAAGCAGCATTCTCAACCATCTCAGACCATAGATGTGGCCGTAT
rJMSF027F19+ TTCGCCGCAATGCCATCAAGCAGCATTCTCAACCATCTCAGACCATAGATGTGGCCGTAT
rJMSF009L10+ TTCGCCGCAATGCCATCAAGCAGCATTCTCAACCATCTCAGACCATAGATGTGGCCGTAT
rJMFF014O14+ TTCGCCGCAATGCCATCAAGCAGCATTCTCAACCATCTCAGACCATAGATGTGGCCGTAT
____________________________________________________________
consensus TTCGCCGCAATGCCATCAAGCAGCATTCTCAACCATCTCAGACCATAGATGTGGCCGTAT
. : . : . : . : . : . :
rJMSF009E09+ CACTTGCAAAAGTAGCTGATGTGGACAGAAATATTGGGAATGAGAAAACTGCAGTAGATG
rJMSF027F19+ CACTTGCAAAAGTAGCTGATGTGGACAGAAATATTGGGAATGAGAAAACTGCAGTAGATG
rJMSF009L10+ CACTTGCAAAAGTAGCTGATGTGGACAGAAATATTGGGAATGAGAAAACTGCAGTAGATG
rJMFF014O14+ CACTTGCAAAAGTAGCTGATGTGGACAGAAATATTGGGAATGAGAAAACTGCAGTAGATG
____________________________________________________________
consensus CACTTGCAAAAGTAGCTGATGTGGACAGAAATATTGGGAATGAGAAAACTGCAGTAGATG
. : . : . : . : . : . :
rJMSF009E09+ GATTTCAAGAAGCCATAGAAATGCTGCAATGTCTGAAACTAAATCCTGAAGAAGTTGGCC
rJMSF027F19+ GATTTCAAGAAGCCATAGAAATGCTGCAATGTCTGAAACTAAATCCTGAAGAAGTTGGCC
rJMSF009L10+ GATTTCAAGAAGCCATAGAAATGCTGCAATGTCTGAAACTAAATCCTGAAGAAGTTGGCC
rJMFF014O14+ GATTTCAAGAAGCCATAGAAATGCTGCAATGTCTGAAACTAAATCCTGAAGAAGTTGGCC
____________________________________________________________
consensus GATTTCAAGAAGCCATAGAAATGCTGCAATGTCTGAAACTAAATCCTGAAGAAGTTGGCC
. : . : . : . : . : . :
rJMSF009E09+ TTGAACAGCGGAGATTGTCGGTGCTCGAGTTCCTTAACAGTCAGCTTGGCAAGAAAGAGA
rJMSF027F19+ TTGAACAGCGGAGATTGTCGGTGCTCGAGTTCCTTAACAGTCAGCTTGGCAAGAAAGAGA
rJMSF009L10+ TTGAACAGCGGAGATTGTCGGTGCTCGAGTTCCTTAACAGTCAGCTTGGCAAGAAAGAGA
rJMFF014O14+ TTGAACAGCGGAGATTGTCGGTGCTCGAGTTCCTTAACAGTCAGCTTGGCAAGAAAGAGA
____________________________________________________________
consensus TTGAACAGCGGAGATTGTCGGTGCTCGAGTTCCTTAACAGTCAGCTTGGCAAGAAAGAGA
. : . : . : . : . : . :
rJMSF009E09+ CCAACTCAGGTTCTTGAGTGAAGATTTTCGTCTGTCCTTACGAGGGACCAACGTAAGAAA
rJMSF027F19+ CCAACTCAGGTTCTTGAGTGAAGATTTTCGTCTGTCCTTACGAGGGACCAACGTAAGAAA
rJMSF009L10+ CCAACTCAGGTTCTTGAGTGAAGATTTTCGTCTGTCCTTACGAGGGACCAACGTAAGAAA
rJMFF014O14+ CCAACTCAGGTTCTTGAGTGAAGATTTTCGTCTGTCCTTACGAGGGACCAACGTAAGAAA
____________________________________________________________
consensus CCAACTCAGGTTCTTGAGTGAAGATTTTCGTCTGTCCTTACGAGGGACCAACGTAAGAAA
. : . : . : . : . : . :
rJMSF009E09+ TATCTCTTTGTAAATGACTTGGAAATAAGTGATAGGTATTTCCATTA-CCTTGTTATATT
rJMSF027F19+ TATCTCTTTGTAAATGACTTGGAAATAAGTGATAGGTATTTCCATTA-CCTTGTTATATT
rJMSF009L10+ TATCTCTTTGTAAATGACTTGGAAATAAGTGATAGGTATTTCCATTACCCTTGTTATATT
rJMFF014O14+ TATCTCTTTGTAAATGACTTGGAAATAAGTGATAGGTATTTCCATTA-CCTTGTTATATT
____________________________________________________________
consensus TATCTCTTTGTAAATGACTTGGAAATAAGTGATAGGTATTTCCATTA-CCTTGTTATATT
. : . : . : . : . : . :
rJMSF009E09+ GTAACTCTGTGATATTTTCTAACTAGTACCCCCACGCT
rJMSF027F19+ GTAACTCTGTGATATTTTCTAACTAGTACCCCCACGCT
rJMSF009L10+ GTAACTCTGTGATATTTTCTAACTAGTACCCCCACGCT
rJMFF014O14+ GTAACTCTGTGATATTTTCTAACTAGTACCCCCACGCTTGAATGTTACAAAAAGAAATAA
____________________________________________________________
consensus GTAACTCTGTGATATTTTCTAACTAGTACCCCCACGCTTGAATGTTACAAAAAGAAATAA