Previous Contig 008896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014N21Sequence502007453 (4)gb:AK176467_18184552e-40Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-I19.736008896 (3)gb:AP004159_18383772e-71Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ11
JMSF033L16Sequence584007453 (4)gb:AK176467_18184551e-40Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-I19.706008896 (3)gb:AP004159_18383773e-69Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ11
JMSF041O13Sequence788007453 (4)gb:AK176467_18184551e-52Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-I19.591008896 (3)gb:AP004159_18383772e-55Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ11

Alignment

This contig is upended


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rJMFF014N21+ GGGACCGCGATGTTAG
                      ____________________________________________________________
consensus GGGACCGCGATGTTAG
 
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rJMSF033L16+ TTGGTATGGCCTCAACTGGTGGCACAAGAGGAGAGGTTATGTATG
rJMFF014N21+ GTGAGAAAATGGCCNTTGGTATGNCCTCAACTGGTGGCACAAGAGGAGAGGTTATGTATG
                      ____________________________________________________________
consensus GTGAGAAAATGGCCNTTGGTATGGCCTCAACTGGTGGCACAAGAGGAGAGGTTATGTATG
 
. : . : . : . : . : . :
rJMSF033L16+ ATCAGAGNTTATTTAACCAGGAGAAGGGGATGGAATCTGGTTTTGCCACTGATGATGCAT
rJMSF041O13+ CCACTGATGATGCAT
rJMFF014N21+ ATCAGAGGTTATTTAACCAGGAGAAGGGGATGGAATCTGGTTTTGCCACTGATGATGCAT
                      ____________________________________________________________
consensus ATCAGAGGTTATTTAACCAGGAGAAGGGGATGGAATCTGGTTTTGCCACTGATGATGCAT
 
. : . : . : . : . : . :
rJMSF033L16+ ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
rJMSF041O13+ ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
rJMFF014N21+ ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
                      ____________________________________________________________
consensus ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
 
. : . : . : . : . : . :
rJMSF033L16+ CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGNGCAGATGAGCAACTGGATAAAATTA
rJMSF041O13+ CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGTGCAGATGAGCAACTGGATAAAATTA
rJMFF014N21+ CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGTGCAGATGAGCAACTGGATAAAATTA
                      ____________________________________________________________
consensus CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGTGCAGATGAGCAACTGGATAAAATTA
 
. : . : . : . : . : . :
rJMSF033L16+ TGAAAACAGNCCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
rJMSF041O13+ TGAAAACAGACCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
rJMFF014N21+ TGAAAACAGACCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
                      ____________________________________________________________
consensus TGAAAACAGACCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
 
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rJMSF033L16+ CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
rJMSF041O13+ CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
rJMFF014N21+ CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
                      ____________________________________________________________
consensus CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
 
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rJMSF033L16+ ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
rJMSF041O13+ ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
rJMFF014N21+ ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
                      ____________________________________________________________
consensus ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
 
. : . : . : . : . : . :
rJMSF033L16+ GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
rJMSF041O13+ GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
rJMFF014N21+ GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
                      ____________________________________________________________
consensus GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
 
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rJMSF033L16+ CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
rJMSF041O13+ CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
rJMFF014N21+ CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
                      ____________________________________________________________
consensus CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
 
. : . : . : . : . : . :
rJMSF033L16+ CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
rJMSF041O13+ CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
rJMFF014N21+ CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
                      ____________________________________________________________
consensus CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
 
. : . : . : . : . : . :
rJMSF033L16+ GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTTTGAT
rJMSF041O13+ GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTTTGAT
rJMFF014N21+ GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTGTGAT
                      ____________________________________________________________
consensus GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTTTGAT
 
. : . : . : . : . : . :
rJMSF033L16+ GCTATTTTGTATCATATTTAAATTGTCTAATAGGCACTGTTNTTAATCATTATAAGAACC
rJMSF041O13+ GCTATTTTGTATCATATTTAAATTGTCTAATAGGCA
rJMFF014N21+ GCTATTTTGTATCATATTTAAATTGTCTAATAGGCACTGTTTTTAATCATTATAAGAACC
                      ____________________________________________________________
consensus GCTATTTTGTATCATATTTAAATTGTCTAATAGGCACTGTTTTTAATCATTATAAGAACC