Previous Contig 008708:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011G07Sequence328000600 (3)gb:AB023041_15154664e-11Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11.572008708 (3)gb:AY035031_15598092e-57Arabidopsis thaliana unknown protein (At3g26100) mRNA, complete cds.>gb:AY059105
JMFF020O02Sequence427000600 (3)gb:AB023041_15154666e-28Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11.634008708 (3)gb:AY035031_15598093e-71Arabidopsis thaliana unknown protein (At3g26100) mRNA, complete cds.>gb:AY059105
JMFS016B09Sequence612008708 (3)gb:AY035031_15598093e-75Arabidopsis thaliana unknown protein (At3g26100) mRNA, complete cds.>gb:AY059105

Alignment

This contig is upended


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JMFS016B09- GAACTAGT
                      ____________________________________________________________
consensus GAACTAGT
 
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JMFS016B09- CGTGCAAATCGCAGCAGGATACTGCTACCTTCTCGCTTTGGCTTGTCAACCTAGTGGAAT
                      ____________________________________________________________
consensus CGTGCAAATCGCAGCAGGATACTGCTACCTTCTCGCTTTGGCTTGTCAACCTAGTGGAAT
 
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JMFS016B09- GTCTGTATATTCTGTTGGTTGTGGTTTGGGTGGAAAGCTCGGTCATGGGACTCGAACTGA
                      ____________________________________________________________
consensus GTCTGTATATTCTGTTGGTTGTGGTTTGGGTGGAAAGCTCGGTCATGGGACTCGAACTGA
 
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JMFS016B09- TGAGAAGGTCCCAAGGTTAATTGAACAGTTTCGGGCTTTGAATCTTCAACCAGTAGTGGT
rJMFF020O02+ GTTTCGGGCTTTGAATCTTCAACCAGTAGTGGT
                      ____________________________________________________________
consensus TGAGAAGGTCCCAAGGTTAATTGAACAGTTTCGGGCTTTGAATCTTCAACCAGTAGTGGT
 
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JMFS016B09- TGCAGCGGGAGCTTGGCATGCTGCGGTGGTTGGGAAAGATGGAAGGGTCTGTACGTGGGG
rJMFF020O02+ TGCAGCGGGAGCTTGGCATGCTGCGGTGGTTGGGAAAGATGGAAGGNTCTGTACGTGGGG
                      ____________________________________________________________
consensus TGCAGCGGGAGCTTGGCATGCTGCGGTGGTTGGGAAAGATGGAAGGGTCTGTACGTGGGG
 
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JMFS016B09- GTGGGGCCGTTATGGATGCTTAGGGCACGGGAATGAAGATTGTGAATCGGCTCCTAAGGT
rJMFF020O02+ GTGGGGCCGTTATGGATGCTTAGGGCACGGGAATGAAGATTGTGAATCGGCTCCTAAGGT
rJMFF011G07+ GGGAATGAAGATTGTGAATCGGCTCCTAAGGT
                      ____________________________________________________________
consensus GTGGGGCCGTTATGGATGCTTAGGGCACGGGAATGAAGATTGTGAATCGGCTCCTAAGGT
 
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JMFS016B09- GGTGGAAGCTCTGAGTAACATTAAAGCCGTTCATGTTGCCACGGGAGACTATACGACTTT
rJMFF020O02+ GGTGGAAGCTNTGAGTAACATTAAANCCGTTCATGTTGCCACGGGAGACTATACGACTTT
rJMFF011G07+ GGTGGAAGCTCTGAGTAACATTAAAGCCGTTCATGTNGCCACGGGAGACTATACGACTTT
                      ____________________________________________________________
consensus GGTGGAAGCTCTGAGTAACATTAAAGCCGTTCATGTTGCCACGGGAGACTATACGACTTT
 
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JMFS016B09- CGTGGTTTCTGAAGATGGCGACGTCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
rJMFF020O02+ CGTGGTTTCTGAAGATGGCGACGCCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
rJMFF011G07+ CGTGGTTTCTGAAGATGGCGACGCCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
                      ____________________________________________________________
consensus CGTGGTTTCTGAAGATGGCGACGCCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
 
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JMFS016B09- ACACAATGCTGTCGTGGCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
rJMFF020O02+ ACACAATGCTGTCGTGNCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
rJMFF011G07+ ACACAATGCTGTCGTGGCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
                      ____________________________________________________________
consensus ACACAATGCTGTCGTGGCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
 
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JMFS016B09- GCTCGTGACATCACTGAAGCAGGTGAACGAGAGGGTTGTACAGATAAGTCTTACGAATTC
rJMFF020O02+ GCTCGTGACATCACTGAAGCAGGTGANCGAGAGGGTTGTACAGATAAGTCTTACGAATTC
rJMFF011G07+ GCTCGTGACATCACTGAAGCAGGTGAACGAGAGGGTTGTACAGATAAGTCTTACGAATTC
                      ____________________________________________________________
consensus GCTCGTGACATCACTGAAGCAGGTGAACGAGAGGGTTGTACAGATAAGTCTTACGAATTC
 
. : . : . : . : . : . :
JMFS016B09- CATATACTGGAACGCCCACACATTTGCGCTCACAGAATCTGGTAAGCTCTTCGCCTTTGG
rJMFF020O02+ CATATACTGGAACGCCCACACATTTGCGCTCACAGAATNTGGTAAGCTCTTCGCCTTTGG
rJMFF011G07+ CATATACTGGAACGCCCACACATTTGCGCTCACAGAATCTGGTAAGCTCTTCGCCTTTGG
                      ____________________________________________________________
consensus CATATACTGGAACGCCCACACATTTGCGCTCACAGAATCTGGTAAGCTCTTCGCCTTTGG
 
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JMFS016B09- GGCG
rJMFF020O02+ GGCGGGCGATAAAGGGCAGCTGGGCGTCGCACTTTCTGCCAACCAAACCGAAAGGGCTAA
rJMFF011G07+ GGCGGGCGATAAAGGGCAGCTGGGCGTCGCACTTTCTGCCAACCAAACCGAAAGGGCTAA
                      ____________________________________________________________
consensus GGCGGGCGATAAAGGGCAGCTGGGCGTCGCACTTTCTGCCAACCAAACCGAAAGGGCTAA
 
. : . : . : . : . : . :
rJMFF020O02+ CCCGGAACGTGTGGAAGTCGATCTCAGTTAACCATTGATCAGATATGTGTAGTCTGTCTA
rJMFF011G07+ CCCGGAACGTGTGGAAGTCGATCTCAGTTAACCATTGATCAGATATGTGTAGTCTGTCTA
                      ____________________________________________________________
consensus CCCGGAACGTGTGGAAGTCGATCTCAGTTAACCATTGATCAGATATGTGTAGTCTGTCTA
 
. : . : . : . : . : . :
rJMFF020O02+ GTTTGTCATCCTAATTAGCCCTCCCCTCATGCTTTGCTCTGCATATGCTGTTTATATCTC
rJMFF011G07+ GTTTGTCATCCTAATTAGCCCTCCCCTCATGCTTTGCTCTGCATATGCTGTTTATATCTC
                      ____________________________________________________________
consensus GTTTGTCATCCTAATTAGCCCTCCCCTCATGCTTTGCTCTGCATATGCTGTTTATATCTC
 
. : . : . : . : . : . :
rJMFF020O02+ T
rJMFF011G07+ TCCATGTCCATTGTGTAAATAGAAACAAAACAATATTTGGAATAAGCTAGGTTTTAAGAT
                      ____________________________________________________________
consensus TCCATGTCCATTGTGTAAATAGAAACAAAACAATATTTGGAATAAGCTAGGTTTTAAGAT