clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF011G07 | Sequence | 328 | 000600 (3) | gb:AB023041_1515466 | 4e-11 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11. | 572 | 008708 (3) | gb:AY035031_1559809 | 2e-57 | Arabidopsis thaliana unknown protein (At3g26100) mRNA, complete cds.>gb:AY059105 |
JMFF020O02 | Sequence | 427 | 000600 (3) | gb:AB023041_1515466 | 6e-28 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11. | 634 | 008708 (3) | gb:AY035031_1559809 | 3e-71 | Arabidopsis thaliana unknown protein (At3g26100) mRNA, complete cds.>gb:AY059105 |
JMFS016B09 | Sequence | 612 | 008708 (3) | gb:AY035031_1559809 | 3e-75 | Arabidopsis thaliana unknown protein (At3g26100) mRNA, complete cds.>gb:AY059105 |
This contig is upended
. : . : . : . : . : . :
JMFS016B09- GAACTAGT
____________________________________________________________
consensus GAACTAGT
. : . : . : . : . : . :
JMFS016B09- CGTGCAAATCGCAGCAGGATACTGCTACCTTCTCGCTTTGGCTTGTCAACCTAGTGGAAT
____________________________________________________________
consensus CGTGCAAATCGCAGCAGGATACTGCTACCTTCTCGCTTTGGCTTGTCAACCTAGTGGAAT
. : . : . : . : . : . :
JMFS016B09- GTCTGTATATTCTGTTGGTTGTGGTTTGGGTGGAAAGCTCGGTCATGGGACTCGAACTGA
____________________________________________________________
consensus GTCTGTATATTCTGTTGGTTGTGGTTTGGGTGGAAAGCTCGGTCATGGGACTCGAACTGA
. : . : . : . : . : . :
JMFS016B09- TGAGAAGGTCCCAAGGTTAATTGAACAGTTTCGGGCTTTGAATCTTCAACCAGTAGTGGT
rJMFF020O02+ GTTTCGGGCTTTGAATCTTCAACCAGTAGTGGT
____________________________________________________________
consensus TGAGAAGGTCCCAAGGTTAATTGAACAGTTTCGGGCTTTGAATCTTCAACCAGTAGTGGT
. : . : . : . : . : . :
JMFS016B09- TGCAGCGGGAGCTTGGCATGCTGCGGTGGTTGGGAAAGATGGAAGGGTCTGTACGTGGGG
rJMFF020O02+ TGCAGCGGGAGCTTGGCATGCTGCGGTGGTTGGGAAAGATGGAAGGNTCTGTACGTGGGG
____________________________________________________________
consensus TGCAGCGGGAGCTTGGCATGCTGCGGTGGTTGGGAAAGATGGAAGGGTCTGTACGTGGGG
. : . : . : . : . : . :
JMFS016B09- GTGGGGCCGTTATGGATGCTTAGGGCACGGGAATGAAGATTGTGAATCGGCTCCTAAGGT
rJMFF020O02+ GTGGGGCCGTTATGGATGCTTAGGGCACGGGAATGAAGATTGTGAATCGGCTCCTAAGGT
rJMFF011G07+ GGGAATGAAGATTGTGAATCGGCTCCTAAGGT
____________________________________________________________
consensus GTGGGGCCGTTATGGATGCTTAGGGCACGGGAATGAAGATTGTGAATCGGCTCCTAAGGT
. : . : . : . : . : . :
JMFS016B09- GGTGGAAGCTCTGAGTAACATTAAAGCCGTTCATGTTGCCACGGGAGACTATACGACTTT
rJMFF020O02+ GGTGGAAGCTNTGAGTAACATTAAANCCGTTCATGTTGCCACGGGAGACTATACGACTTT
rJMFF011G07+ GGTGGAAGCTCTGAGTAACATTAAAGCCGTTCATGTNGCCACGGGAGACTATACGACTTT
____________________________________________________________
consensus GGTGGAAGCTCTGAGTAACATTAAAGCCGTTCATGTTGCCACGGGAGACTATACGACTTT
. : . : . : . : . : . :
JMFS016B09- CGTGGTTTCTGAAGATGGCGACGTCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
rJMFF020O02+ CGTGGTTTCTGAAGATGGCGACGCCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
rJMFF011G07+ CGTGGTTTCTGAAGATGGCGACGCCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
____________________________________________________________
consensus CGTGGTTTCTGAAGATGGCGACGCCTATTCGTTTGGTTGTGGAGAATCGTCTAGTCTTGG
. : . : . : . : . : . :
JMFS016B09- ACACAATGCTGTCGTGGCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
rJMFF020O02+ ACACAATGCTGTCGTGNCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
rJMFF011G07+ ACACAATGCTGTCGTGGCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
____________________________________________________________
consensus ACACAATGCTGTCGTGGCCGATGGACAGGTAAATAGGCACTCGAATATCTTAAGCCCCGA
. : . : . : . : . : . :
JMFS016B09- GCTCGTGACATCACTGAAGCAGGTGAACGAGAGGGTTGTACAGATAAGTCTTACGAATTC
rJMFF020O02+ GCTCGTGACATCACTGAAGCAGGTGANCGAGAGGGTTGTACAGATAAGTCTTACGAATTC
rJMFF011G07+ GCTCGTGACATCACTGAAGCAGGTGAACGAGAGGGTTGTACAGATAAGTCTTACGAATTC
____________________________________________________________
consensus GCTCGTGACATCACTGAAGCAGGTGAACGAGAGGGTTGTACAGATAAGTCTTACGAATTC
. : . : . : . : . : . :
JMFS016B09- CATATACTGGAACGCCCACACATTTGCGCTCACAGAATCTGGTAAGCTCTTCGCCTTTGG
rJMFF020O02+ CATATACTGGAACGCCCACACATTTGCGCTCACAGAATNTGGTAAGCTCTTCGCCTTTGG
rJMFF011G07+ CATATACTGGAACGCCCACACATTTGCGCTCACAGAATCTGGTAAGCTCTTCGCCTTTGG
____________________________________________________________
consensus CATATACTGGAACGCCCACACATTTGCGCTCACAGAATCTGGTAAGCTCTTCGCCTTTGG
. : . : . : . : . : . :
JMFS016B09- GGCG
rJMFF020O02+ GGCGGGCGATAAAGGGCAGCTGGGCGTCGCACTTTCTGCCAACCAAACCGAAAGGGCTAA
rJMFF011G07+ GGCGGGCGATAAAGGGCAGCTGGGCGTCGCACTTTCTGCCAACCAAACCGAAAGGGCTAA
____________________________________________________________
consensus GGCGGGCGATAAAGGGCAGCTGGGCGTCGCACTTTCTGCCAACCAAACCGAAAGGGCTAA
. : . : . : . : . : . :
rJMFF020O02+ CCCGGAACGTGTGGAAGTCGATCTCAGTTAACCATTGATCAGATATGTGTAGTCTGTCTA
rJMFF011G07+ CCCGGAACGTGTGGAAGTCGATCTCAGTTAACCATTGATCAGATATGTGTAGTCTGTCTA
____________________________________________________________
consensus CCCGGAACGTGTGGAAGTCGATCTCAGTTAACCATTGATCAGATATGTGTAGTCTGTCTA
. : . : . : . : . : . :
rJMFF020O02+ GTTTGTCATCCTAATTAGCCCTCCCCTCATGCTTTGCTCTGCATATGCTGTTTATATCTC
rJMFF011G07+ GTTTGTCATCCTAATTAGCCCTCCCCTCATGCTTTGCTCTGCATATGCTGTTTATATCTC
____________________________________________________________
consensus GTTTGTCATCCTAATTAGCCCTCCCCTCATGCTTTGCTCTGCATATGCTGTTTATATCTC
. : . : . : . : . : . :
rJMFF020O02+ T
rJMFF011G07+ TCCATGTCCATTGTGTAAATAGAAACAAAACAATATTTGGAATAAGCTAGGTTTTAAGAT
____________________________________________________________
consensus TCCATGTCCATTGTGTAAATAGAAACAAAACAATATTTGGAATAAGCTAGGTTTTAAGAT