Previous Contig 008689:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009M22Sequence600007976 (2)gb:AC091774_17350494e-04Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence.>gb711008689 (4)pir|T51100|T511001e-73protein phosphatase 2C homolog [imported] - common ice plant>gb:AF097667_1767893
JMFF011A09Sequence518006041 (3)gb:AC091774_17350491e-11Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence.>gb711008689 (4)pir|T51100|T511001e-55protein phosphatase 2C homolog [imported] - common ice plant>gb:AF097667_1767893
JMSF022B03Sequence686006041 (3)pir|T51100|T511009e-28protein phosphatase 2C homolog [imported] - common ice plant>gb:AF097667_1767893770008689 (4)pir|T51100|T511005e-79protein phosphatase 2C homolog [imported] - common ice plant>gb:AF097667_1767893
JMSF050C23Sequence656007976 (2)688008689 (4)pir|T51100|T511001e-64protein phosphatase 2C homolog [imported] - common ice plant>gb:AF097667_1767893

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF009M22+ TCTGAAGCGTAATGTATGGCGGGTAAAGGGCCTTGATACAGATT
rJMSF022B03+ CCACAGATTGTTTTTCTGAAGCGTAATGTATGGCGGGTAAAGGG-CTTGATACAGATT
                      ____________________________________________________________
consensus CCACAGATTGTTTTTCTGAAGCGTAATGTATGGCGGGTAAAGGGCCTTGATACAGATT
 
. : . : . : . : . : . :
rJMFF009M22+ TCCAGATCCATTGGTGATGTGTATCTTAAAAAGGCTGAATACAACAGAGAGCCTTTGTAT
rJMSF022B03+ TCCAGATCCATTGGTGATGTGTATCTTAAAAAGGCTGAATACAACAGAGAGCCTTTGTAT
rJMSF050C23+ GGCTGAATACAACAGAGAGCCTTTGTAT
                      ____________________________________________________________
consensus TCCAGATCCATTGGTGATGTGTATCTTAAAAAGGCTGAATACAACAGAGAGCCTTTGTAT
 
. : . : . : . : . : . :
rJMFF009M22+ GCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAAT
rJMSF022B03+ GCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAAT
rJMSF050C23+ GCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAAT
rJMFF011A09+ TCGTTTGAAGGAACCCTTTAACAGCCCCCATATTGAGCTCAGAGCCATCAAT
                      ____________________________________________________________
consensus GCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAAT
 
. : . : . : . : . : . :
rJMFF009M22+ TTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTTG
rJMSF022B03+ TTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTTG
rJMSF050C23+ TTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTTG
rJMFF011A09+ TTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTTG
                      ____________________________________________________________
consensus TTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTTG
 
. : . : . : . : . : . :
rJMFF009M22+ GGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAAG
rJMSF022B03+ GGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAAG
rJMSF050C23+ GGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAAG
rJMFF011A09+ GGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAAG
                      ____________________________________________________________
consensus GGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAAG
 
. : . : . : . : . : . :
rJMFF009M22+ TGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGTA
rJMSF022B03+ TGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGTA
rJMSF050C23+ TGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGTA
rJMFF011A09+ TGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGTA
                      ____________________________________________________________
consensus TGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGTA
 
. : . : . : . : . : . :
rJMFF009M22+ CTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAAT
rJMSF022B03+ CTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAAT
rJMSF050C23+ CTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAAT
rJMFF011A09+ CTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAAT
                      ____________________________________________________________
consensus CTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAAT
 
. : . : . : . : . : . :
rJMFF009M22+ CATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCAC
rJMSF022B03+ CATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCAC
rJMSF050C23+ CATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCAC
rJMFF011A09+ CATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCAC
                      ____________________________________________________________
consensus CATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCAC
 
. : . : . : . : . : . :
rJMFF009M22+ TTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGATG
rJMSF022B03+ TTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGATG
rJMSF050C23+ TTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGATG
rJMFF011A09+ TTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGATG
                      ____________________________________________________________
consensus TTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGATG
 
. : . : . : . : . : . :
rJMFF009M22+ CACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTAT
rJMSF022B03+ CACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTAT
rJMSF050C23+ CACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTAT
rJMFF011A09+ CACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTAT
                      ____________________________________________________________
consensus CACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTAT
 
. : . : . : . : . : . :
rJMFF009M22+ GGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAAA
rJMSF022B03+ GGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAAA
rJMSF050C23+ GGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAAA
rJMFF011A09+ GGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAAA
                      ____________________________________________________________
consensus GGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAAA
 
. : . : . : . : . : . :
rJMFF009M22+ TGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGT
rJMSF022B03+ TGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGAA
rJMSF050C23+ TGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGAA
rJMFF011A09+ TGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGAA
                      ____________________________________________________________
consensus TGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGAA
 
. : . : . : . : . : . :
rJMSF022B03+ AAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAA-CACGGTGTACAAAATTT
rJMSF050C23+ AAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAANCACGGTGTACAAAATTT
rJMFF011A09+ AAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAA-CACGGTGTACAAAATTTTGCTG
                      ____________________________________________________________
consensus AAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAA-CACGGTGTACAAAATTTTGCTG
 
. : . : . : . : . : . :
rJMFF011A09+ TTCAAATTTCGAAATCTGGAATATGATCATTTACAAGATTTGGGACATGAATCCCCAGAT
                      ____________________________________________________________
consensus TTCAAATTTCGAAATCTGGAATATGATCATTTACAAGATTTGGGACATGAATCCCCAGAT