Previous Contig 008656:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010I24Sequence502001199 (3)703008656 (2)gb:AP005885_18596559e-42Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P065
JMFF025D20Sequence615001199 (3)707008656 (2)gb:AP005885_18596553e-42Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P065

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF025D20+ ACCTATTCCAAAAGATCGTTTGCAGACCTATGCACGTCTTGCAGAGC
rJMFF010I24+ ATTCCAAAAGATCGTTTGCAGACCTATGCACGTCTTGCAGAGC
                      ____________________________________________________________
consensus ACCTATTCCAAAAGATCGTTTGCAGACCTATGCACGTCTTGCAGAGC
 
. : . : . : . : . : . :
rJMFF025D20+ TCAGAGAACTCATCCCTAACGGAGAGAAGATGAGCATTGACCGGTTGCTACATCGAACCA
rJMFF010I24+ TCAGAGAACTCATCCCTAACGGAGAGAAGATGAGCATTGACCGGTTGCTACATCGAACCA
                      ____________________________________________________________
consensus TCAGAGAACTCATCCCTAACGGAGAGAAGATGAGCATTGACCGGTTGCTACATCGAACCA
 
. : . : . : . : . : . :
rJMFF025D20+ TAAAGCAGCTGCATTTCTTGCAAAGTGTTACAAAACATGCTAAAAGACTCGTGAAAACTG
rJMFF010I24+ TAAAGCAGCTGCATTTCTTGCAAAGTGTTACAAAACATGCTAAAAGACTCGTGAAAACTG
                      ____________________________________________________________
consensus TAAAGCAGCTGCATTTCTTGCAAAGTGTTACAAAACATGCTAAAAGACTCGTGAAAACTG
 
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rJMFF025D20+ AAGAACTTAAGGATAGAAAGGATCAGAATGGAGTCACGTGGGCTTGTGAAATTGAAAACG
rJMFF010I24+ AAGAACTTAAGGATAGAAAGGATCAGAATGGAGTCACGTGGGCTTGTGAAATTGAAAACG
                      ____________________________________________________________
consensus AAGAACTTAAGGATAGAAAGGATCAGAATGGAGTCACGTGGGCTTGTGAAATTGAAAACG
 
. : . : . : . : . : . :
rJMFF025D20+ AAACAATGATTTGCCCGCTGATAGTTGAGGATCTTAGTACTCCTGGCCAAATGCTTATAG
rJMFF010I24+ AAACAATGATTTGCCCGCTGATAGTTGAGGATCTTAGTACTCCTGGCCAAATGCTTATAG
                      ____________________________________________________________
consensus AAACAATGATTTGCCCGCTGATAGTTGAGGATCTTAGTACTCCTGGCCAAATGCTTATAG
 
. : . : . : . : . : . :
rJMFF025D20+ AGATCCTCTGTCAAGAACAAGGTTTCTTTCTGGAGATAGTGGATATAATCCGAGGTTTTG
rJMFF010I24+ AGATCCTCTGTCAAGAACAAGGTTTCTTTCTGGAGATAGTGGATATAATCCGAGGTTTTG
                      ____________________________________________________________
consensus AGATCCTCTGTCAAGAACAAGGTTTCTTTCTGGAGATAGTGGATATAATCCGAGGTTTTG
 
. : . : . : . : . : . :
rJMFF025D20+ GCTTGAATATACTGACGGGTTTCATGGAAGTTCACGAGGCTAAGATATGTGCACACTACA
rJMFF010I24+ GCTTGAATATACTGACGGGTTTCATGGAAGTTCACGAGGCTAAGATATGTGCACACTACA
                      ____________________________________________________________
consensus GCTTGAATATACTGACGGGTTTCATGGAAGTTCACGAGGCTAAGATATGTGCACACTACA
 
. : . : . : . : . : . :
rJMFF025D20+ TTGTTGAGGCTGAGGCAAACAGATTCGTATCGAGGCACGAGATATTTTCCTCGCTCGTTC
rJMFF010I24+ TTGTTGAGGCTGAGGCAAACAGATTCGTATCGAGGCACGAGATATTTTCCTCGCTCGTTC
                      ____________________________________________________________
consensus TTGTTGAGGCTGAGGCAAACAGATTCGTATCGAGGCACGAGATATTTTCCTCGCTCGTTC
 
. : . : . : . : . : . :
rJMFF025D20+ AGATTTTACAGCTTACGGGCCCTAGCGAGTTTAGCCCGAATGATCAACATGGCAATGTTA
rJMFF010I24+ AGATTTTACAGCTTACGGGCCCTAGCGAGTTTAGCCCGAATGATCAACATGGCAATGTTA
                      ____________________________________________________________
consensus AGATTTTACAGCTTACGGGCCCTAGCGAGTTTAGCCCGAATGATCAACATGGCAATGTTA
 
. : . : . : . : . : . :
rJMFF025D20+ GCTTGTTGAACAATTCTCCCCAACCTGCCAGCTTGCCTGATAGAACTCCATGTATGACAT
rJMFF010I24+ GCTTGTTGAACAATTCTCCCCAACCTGCCAGCTTGCCTGATAGAACTCCATGTATGACAT
                      ____________________________________________________________
consensus GCTTGTTGAACAATTCTCCCCAACCTGCCAGCTTGCCTGATAGAACTCCATGTATGACAT
 
. : . : . : . : . : . :
rJMFF025D20+ GACAGAAAATGTTTGCCTGATAAAACATGAAACCTAGTCAGACCAGGAAAGTGGATAATG
rJMFF010I24+ GACAGAAAATGTTTGCCTGATAAAACATGAAACCTAGTCAGACCAGGAAAGTGGATAATG
                      ____________________________________________________________
consensus GACAGAAAATGTTTGCCTGATAAAACATGAAACCTAGTCAGACCAGGAAAGTGGATAATG
 
. : . : . : . : . : . :
rJMFF025D20+ CAGAGGTGAAATGTTCCTGTTTTGCTTTTCCTGAAAATGGTGAGCACATGATGCCAGAAC
rJMFF010I24+ CAGAGGTGAAATGTTCCTGTTTTGCTTTTCCTGAAAATGGTGAGCACATGATGCCAGAAC
                      ____________________________________________________________
consensus CAGAGGTGAAATGTTCCTGTTTTGCTTTTCCTGAAAATGGTGAGCACATGATGCCAGAAC