Previous Contig 008623:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002M06Sequence590006177 (10)sp|O82663|DHSA_ARATH8e-64Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3696008623 (9)gb:AP004338_18404161e-96Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050
JMFF009O15Sequence598006177 (10)sp|O82663|DHSA_ARATH1e-60Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3756008623 (9)gb:AP004338_18404162e-87Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050
JMFF017L20Sequence572008623 (9)gb:AP004338_1840416e-104Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050
JMFF022H02Sequence521006177 (10)sp|O82663|DHSA_ARATH5e-42Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3450008623 (9)gb:AP004338_18404162e-33Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050
JMFF038I06Sequence549006177 (10)sp|O82663|DHSA_ARATH3e-56Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3781008623 (9)gb:AP004338_18404161e-89Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050
JMFF039L11Sequence586006177 (10)sp|O82663|DHSA_ARATH2e-62Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3752008623 (9)gb:AP004338_18404163e-87Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050
JMFF049B05Sequence633006177 (10)sp|O82663|DHSA_ARATH4e-71Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3613008623 (9)gb:AP004338_18404161e-66Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050
JMSF023N21Sequence599006177 (10)sp|O82663|DHSA_ARATH2e-57Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3784008623 (9)sp|O82663|DHSA_ARATHe-133Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3
JMSF039E23Sequence711006177 (10)sp|O82663|DHSA_ARATH6e-88Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3856008623 (9)sp|O82663|DHSA_ARATHe-119Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF017L20- ATAA
                      ____________________________________________________________
consensus ATAA
 
. : . : . : . : . : . :
JMFF017L20- AGATGGAAGCTGCCAAGGTGTAATTGCTCTAAATATGGAGGATGGTACTTTACATCGCTT
                      ____________________________________________________________
consensus AGATGGAAGCTGCCAAGGTGTAATTGCTCTAAATATGGAGGATGGTACTTTACATCGCTT
 
. : . : . : . : . : . :
JMFF017L20- CCGTGCTGCTTCTACAATTTTGGCCACAGGGGGATATGGCAGAACGTATTTCTCTGCAAC
                      ____________________________________________________________
consensus CCGTGCTGCTTCTACAATTTTGGCCACAGGGGGATATGGCAGAACGTATTTCTCTGCAAC
 
. : . : . : . : . : . :
JMFF017L20- CTCAGCTCATACTTGCACAGGAGATGGGAATGCTATGGTTGCACGTGCTGGGCTTCCTCT
                      ____________________________________________________________
consensus CTCAGCTCATACTTGCACAGGAGATGGGAATGCTATGGTTGCACGTGCTGGGCTTCCTCT
 
. : . : . : . : . : . :
JMFF017L20- CCAGGACCTTGAGTTTGTGCAATTCCATCCAACTGGTATATATGGAGCTGGTTGTCTAAT
                      ____________________________________________________________
consensus CCAGGACCTTGAGTTTGTGCAATTCCATCCAACTGGTATATATGGAGCTGGTTGTCTAAT
 
. : . : . : . : . : . :
JMFF017L20- TACTGAAGGGTCTCGTGGTGAAGGTGGGATTCTCAGGAATAGTGAAGGTGAGCGATTTAT
                      ____________________________________________________________
consensus TACTGAAGGGTCTCGTGGTGAAGGTGGGATTCTCAGGAATAGTGAAGGTGAGCGATTTAT
 
. : . : . : . : . : . :
JMFF017L20- GGAACGGTATGCACCAACAGCCAAGGATCTTGCATCTAGGGATGTTGTTTCAAGGTCTAT
                      ____________________________________________________________
consensus GGAACGGTATGCACCAACAGCCAAGGATCTTGCATCTAGGGATGTTGTTTCAAGGTCTAT
 
. : . : . : . : . : . :
JMFF017L20- GACAATGGAAATTCGTGAAGGGCGTGGTGTCGGACCACTAAAGGACCATATCTATCTCCA
                      ____________________________________________________________
consensus GACAATGGAAATTCGTGAAGGGCGTGGTGTCGGACCACTAAAGGACCATATCTATCTCCA
 
. : . : . : . : . : . :
JMFF017L20- CTTGAACCATTTACCTCCGGAAGTCCTTAAAGAAAGGCTTCCTGGTATCTCTGAAACTGC
                      ____________________________________________________________
consensus CTTGAACCATTTACCTCCGGAAGTCCTTAAAGAAAGGCTTCCTGGTATCTCTGAAACTGC
 
. : . : . : . : . : . :
JMFF017L20- TGCCATTTTTGCTGGTGTAGATGTCACAAAGGAGCCAATTCCTGTTTTACCTACTGTGCA
rJMSF023N21+ GGTGTAGATGTCACCAAGGAGCCNATTCCTGTTTTACCTACTGTGCN
                      ____________________________________________________________
consensus TGCCATTTTTGCTGGTGTAGATGTCACCAAGGAGCCAATTCCTGTTTTACCTACTGTGCA
 
. : . : . : . : . : . :
JMFF017L20- TTATAATATGGGTGGGATTCCAACAAAT
rJMSF023N21+ TTATNATATGGGTGGGATTCCAACAAATCACCATGGAGAGGTGGTGACTGTCAAAGGTAA
rJMSF039E23+ CCATGGAGAGGTGGTGACTGTCAAAGGTAA
                      ____________________________________________________________
consensus TTATAATATGGGTGGGATTCCAACAAATCACCATGGAGAGGTGGTGACTGTCAAAGGTAA
 
. : . : . : . : . : . :
rJMSF023N21+ TGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCAGT
rJMSF039E23+ TGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCAGT
                      ____________________________________________________________
consensus TGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCAGT
 
. : . : . : . : . : . :
rJMSF023N21+ TCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGC
rJMFF002M06+ CTTGACATTGTTGTTTTTGGTCGGGC
rJMSF039E23+ TCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGC
rJMFF038I06+ GGC
                      ____________________________________________________________
consensus TCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGC
 
. : . : . : . : . : . :
rJMSF023N21+ ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMFF002M06+ ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMSF039E23+ ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMFF038I06+ ATGTGCAANCCGGGTTGCAGAAATCCAAAGNCCAGGAGAGAAACAGAACCCTTNGGAGAA
rJMFF039L11+ TCCAAAGNCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMFF009O15+ ATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
                      ____________________________________________________________
consensus ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
 
. : . : . : . : . : . :
rJMSF023N21+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF002M06+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMSF039E23+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF038I06+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF039L11+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF009O15+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
                      ____________________________________________________________
consensus GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
 
. : . : . : . : . : . :
rJMSF023N21+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF002M06+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTCTT
rJMSF039E23+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF038I06+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF039L11+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF049B05+ ATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF009O15+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
                      ____________________________________________________________
consensus GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
 
. : . : . : . : . : . :
rJMSF023N21+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF002M06+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMSF039E23+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF038I06+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF039L11+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF049B05+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF009O15+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
                      ____________________________________________________________
consensus CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
 
. : . : . : . : . : . :
rJMSF023N21+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF002M06+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMSF039E23+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF038I06+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF039L11+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF049B05+ CCACGACGTGAAGGTGGAAGATCGCAGTNTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF009O15+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
                      ____________________________________________________________
consensus CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
 
. : . : . : . : . : . :
rJMSF023N21+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGTACTCTGCTGAAGCTAGAAA
rJMFF002M06+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMSF039E23+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF038I06+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF039L11+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF049B05+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF022H02+ TAATGCTTGTATCACAATNCACTCTGCTGAAGCTAGAAA
rJMFF009O15+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
                      ____________________________________________________________
consensus TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
 
. : . : . : . : . : . :
rJMSF023N21+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF002M06+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMSF039E23+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF038I06+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF039L11+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF049B05+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF022H02+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF009O15+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
                      ____________________________________________________________
consensus AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
 
. : . : . : . : . : . :
rJMSF023N21+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF002M06+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMSF039E23+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF038I06+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF039L11+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF049B05+ GAGACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF022H02+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF009O15+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
                      ____________________________________________________________
consensus GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
 
. : . : . : . : . : . :
rJMSF023N21+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF002M06+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMSF039E23+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF038I06+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF039L11+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF049B05+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF022H02+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF009O15+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
                      ____________________________________________________________
consensus CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
 
. : . : . : . : . : . :
rJMSF023N21+ AATTTACTCAAAACGCT
rJMFF002M06+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMSF039E23+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF038I06+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF039L11+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF049B05+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF022H02+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF009O15+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
                      ____________________________________________________________
consensus AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
 
. : . : . : . : . : . :
rJMFF002M06+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMSF039E23+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF038I06+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF039L11+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF049B05+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF022H02+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF009O15+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
                      ____________________________________________________________
consensus ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
 
. : . : . : . : . : . :
rJMFF002M06+ ATGCATAA-CT
rJMSF039E23+ ATGCATAANCTTGAAANCTGTGCATAAACTTTGGAGGCATTAGTGT
rJMFF038I06+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF039L11+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCCTTCTGTATTC
rJMFF049B05+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF022H02+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF009O15+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
                      ____________________________________________________________
consensus ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
 
. : . : . : . : . : . :
rJMFF038I06+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF039L11+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF049B05+ CGTATTCAGTGAGGAAGCATGAGACTCCAGA
rJMFF022H02+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF009O15+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTCACTGTAC
                      ____________________________________________________________
consensus CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTCACTGTAC