| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002M06 | Sequence | 590 | 006177 (10) | sp|O82663|DHSA_ARATH | 8e-64 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 696 | 008623 (9) | gb:AP004338_1840416 | 1e-96 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050 |
| JMFF009O15 | Sequence | 598 | 006177 (10) | sp|O82663|DHSA_ARATH | 1e-60 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 756 | 008623 (9) | gb:AP004338_1840416 | 2e-87 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050 |
| JMFF017L20 | Sequence | 572 | 008623 (9) | gb:AP004338_1840416 | e-104 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050 | |||||
| JMFF022H02 | Sequence | 521 | 006177 (10) | sp|O82663|DHSA_ARATH | 5e-42 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 450 | 008623 (9) | gb:AP004338_1840416 | 2e-33 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050 |
| JMFF038I06 | Sequence | 549 | 006177 (10) | sp|O82663|DHSA_ARATH | 3e-56 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 781 | 008623 (9) | gb:AP004338_1840416 | 1e-89 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050 |
| JMFF039L11 | Sequence | 586 | 006177 (10) | sp|O82663|DHSA_ARATH | 2e-62 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 752 | 008623 (9) | gb:AP004338_1840416 | 3e-87 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050 |
| JMFF049B05 | Sequence | 633 | 006177 (10) | sp|O82663|DHSA_ARATH | 4e-71 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 613 | 008623 (9) | gb:AP004338_1840416 | 1e-66 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P050 |
| JMSF023N21 | Sequence | 599 | 006177 (10) | sp|O82663|DHSA_ARATH | 2e-57 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 784 | 008623 (9) | sp|O82663|DHSA_ARATH | e-133 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 |
| JMSF039E23 | Sequence | 711 | 006177 (10) | sp|O82663|DHSA_ARATH | 6e-88 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 | 856 | 008623 (9) | sp|O82663|DHSA_ARATH | e-119 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3 |
This contig is upended
. : . : . : . : . : . :
JMFF017L20- ATAA
____________________________________________________________
consensus ATAA
. : . : . : . : . : . :
JMFF017L20- AGATGGAAGCTGCCAAGGTGTAATTGCTCTAAATATGGAGGATGGTACTTTACATCGCTT
____________________________________________________________
consensus AGATGGAAGCTGCCAAGGTGTAATTGCTCTAAATATGGAGGATGGTACTTTACATCGCTT
. : . : . : . : . : . :
JMFF017L20- CCGTGCTGCTTCTACAATTTTGGCCACAGGGGGATATGGCAGAACGTATTTCTCTGCAAC
____________________________________________________________
consensus CCGTGCTGCTTCTACAATTTTGGCCACAGGGGGATATGGCAGAACGTATTTCTCTGCAAC
. : . : . : . : . : . :
JMFF017L20- CTCAGCTCATACTTGCACAGGAGATGGGAATGCTATGGTTGCACGTGCTGGGCTTCCTCT
____________________________________________________________
consensus CTCAGCTCATACTTGCACAGGAGATGGGAATGCTATGGTTGCACGTGCTGGGCTTCCTCT
. : . : . : . : . : . :
JMFF017L20- CCAGGACCTTGAGTTTGTGCAATTCCATCCAACTGGTATATATGGAGCTGGTTGTCTAAT
____________________________________________________________
consensus CCAGGACCTTGAGTTTGTGCAATTCCATCCAACTGGTATATATGGAGCTGGTTGTCTAAT
. : . : . : . : . : . :
JMFF017L20- TACTGAAGGGTCTCGTGGTGAAGGTGGGATTCTCAGGAATAGTGAAGGTGAGCGATTTAT
____________________________________________________________
consensus TACTGAAGGGTCTCGTGGTGAAGGTGGGATTCTCAGGAATAGTGAAGGTGAGCGATTTAT
. : . : . : . : . : . :
JMFF017L20- GGAACGGTATGCACCAACAGCCAAGGATCTTGCATCTAGGGATGTTGTTTCAAGGTCTAT
____________________________________________________________
consensus GGAACGGTATGCACCAACAGCCAAGGATCTTGCATCTAGGGATGTTGTTTCAAGGTCTAT
. : . : . : . : . : . :
JMFF017L20- GACAATGGAAATTCGTGAAGGGCGTGGTGTCGGACCACTAAAGGACCATATCTATCTCCA
____________________________________________________________
consensus GACAATGGAAATTCGTGAAGGGCGTGGTGTCGGACCACTAAAGGACCATATCTATCTCCA
. : . : . : . : . : . :
JMFF017L20- CTTGAACCATTTACCTCCGGAAGTCCTTAAAGAAAGGCTTCCTGGTATCTCTGAAACTGC
____________________________________________________________
consensus CTTGAACCATTTACCTCCGGAAGTCCTTAAAGAAAGGCTTCCTGGTATCTCTGAAACTGC
. : . : . : . : . : . :
JMFF017L20- TGCCATTTTTGCTGGTGTAGATGTCACAAAGGAGCCAATTCCTGTTTTACCTACTGTGCA
rJMSF023N21+ GGTGTAGATGTCACCAAGGAGCCNATTCCTGTTTTACCTACTGTGCN
____________________________________________________________
consensus TGCCATTTTTGCTGGTGTAGATGTCACCAAGGAGCCAATTCCTGTTTTACCTACTGTGCA
. : . : . : . : . : . :
JMFF017L20- TTATAATATGGGTGGGATTCCAACAAAT
rJMSF023N21+ TTATNATATGGGTGGGATTCCAACAAATCACCATGGAGAGGTGGTGACTGTCAAAGGTAA
rJMSF039E23+ CCATGGAGAGGTGGTGACTGTCAAAGGTAA
____________________________________________________________
consensus TTATAATATGGGTGGGATTCCAACAAATCACCATGGAGAGGTGGTGACTGTCAAAGGTAA
. : . : . : . : . : . :
rJMSF023N21+ TGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCAGT
rJMSF039E23+ TGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCAGT
____________________________________________________________
consensus TGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCAGT
. : . : . : . : . : . :
rJMSF023N21+ TCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGC
rJMFF002M06+ CTTGACATTGTTGTTTTTGGTCGGGC
rJMSF039E23+ TCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGC
rJMFF038I06+ GGC
____________________________________________________________
consensus TCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGC
. : . : . : . : . : . :
rJMSF023N21+ ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMFF002M06+ ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMSF039E23+ ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMFF038I06+ ATGTGCAANCCGGGTTGCAGAAATCCAAAGNCCAGGAGAGAAACAGAACCCTTNGGAGAA
rJMFF039L11+ TCCAAAGNCCAGGAGAGAAACAGAAACCTTTGGAGAA
rJMFF009O15+ ATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
____________________________________________________________
consensus ATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAGAA
. : . : . : . : . : . :
rJMSF023N21+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF002M06+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMSF039E23+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF038I06+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF039L11+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
rJMFF009O15+ GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
____________________________________________________________
consensus GGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCATT
. : . : . : . : . : . :
rJMSF023N21+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF002M06+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTCTT
rJMSF039E23+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF038I06+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF039L11+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF049B05+ ATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
rJMFF009O15+ GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
____________________________________________________________
consensus GCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTTTT
. : . : . : . : . : . :
rJMSF023N21+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF002M06+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMSF039E23+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF038I06+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF039L11+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF049B05+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
rJMFF009O15+ CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
____________________________________________________________
consensus CCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGCTT
. : . : . : . : . : . :
rJMSF023N21+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF002M06+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMSF039E23+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF038I06+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF039L11+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF049B05+ CCACGACGTGAAGGTGGAAGATCGCAGTNTGATATGGAATTCAGATCTTATAGAGACTGT
rJMFF009O15+ CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
____________________________________________________________
consensus CCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACTGT
. : . : . : . : . : . :
rJMSF023N21+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGTACTCTGCTGAAGCTAGAAA
rJMFF002M06+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMSF039E23+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF038I06+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF039L11+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF049B05+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
rJMFF022H02+ TAATGCTTGTATCACAATNCACTCTGCTGAAGCTAGAAA
rJMFF009O15+ TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
____________________________________________________________
consensus TGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGAAA
. : . : . : . : . : . :
rJMSF023N21+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF002M06+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMSF039E23+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF038I06+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF039L11+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF049B05+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF022H02+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
rJMFF009O15+ AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
____________________________________________________________
consensus AGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGGAT
. : . : . : . : . : . :
rJMSF023N21+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF002M06+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMSF039E23+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF038I06+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF039L11+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF049B05+ GAGACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF022H02+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
rJMFF009O15+ GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
____________________________________________________________
consensus GAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTTCA
. : . : . : . : . : . :
rJMSF023N21+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF002M06+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMSF039E23+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF038I06+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF039L11+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF049B05+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF022H02+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
rJMFF009O15+ CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
____________________________________________________________
consensus CATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAATC
. : . : . : . : . : . :
rJMSF023N21+ AATTTACTCAAAACGCT
rJMFF002M06+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMSF039E23+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF038I06+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF039L11+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF049B05+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF022H02+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
rJMFF009O15+ AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
____________________________________________________________
consensus AATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCGCA
. : . : . : . : . : . :
rJMFF002M06+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMSF039E23+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF038I06+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF039L11+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF049B05+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF022H02+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
rJMFF009O15+ ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
____________________________________________________________
consensus ATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATGTG
. : . : . : . : . : . :
rJMFF002M06+ ATGCATAA-CT
rJMSF039E23+ ATGCATAANCTTGAAANCTGTGCATAAACTTTGGAGGCATTAGTGT
rJMFF038I06+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF039L11+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCCTTCTGTATTC
rJMFF049B05+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF022H02+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF009O15+ ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
____________________________________________________________
consensus ATGCATAA-CTTGAAA-CTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
. : . : . : . : . : . :
rJMFF038I06+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF039L11+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF049B05+ CGTATTCAGTGAGGAAGCATGAGACTCCAGA
rJMFF022H02+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF009O15+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTCACTGTAC
____________________________________________________________
consensus CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTCACTGTAC