Previous Contig 008616:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009L24Sequence431006003 (11)gb:AY052356_15627274e-43Arabidopsis thaliana At1g23080/T26J12_14 mRNA, complete cds.713008616 (4)gb:AF515434_18074551e-27Populus tremula x Populus tremuloides PIN1-like auxin transport protein (pin3) m
JMSF015G02Sequence232006003 (11)gb:AY115836_15789265e-08Medicago truncatula auxin efflux carrier protein (PIN1) gene, complete cds.732008616 (4)gb:AY115838_15789282e-37Medicago truncatula auxin efflux carrier protein (PIN3) gene, complete cds.
JMSF017E02Sequence237006003 (11)gb:AY115836_15789267e-10Medicago truncatula auxin efflux carrier protein (PIN1) gene, complete cds.674008616 (4)gb:AY115838_15789281e-41Medicago truncatula auxin efflux carrier protein (PIN3) gene, complete cds.
JMSF021K08Sequence676006003 (11)gb:AY052356_15627275e-89Arabidopsis thaliana At1g23080/T26J12_14 mRNA, complete cds.720008616 (4)gb:AF515434_18074553e-36Populus tremula x Populus tremuloides PIN1-like auxin transport protein (pin3) m

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF017E02+ AAGATAATTTCATGTGGGAACACGGTGGCGTCCTTTGCCATGGCGGTTAGGTT
rJMSF021K08+ TTTGCCATGGCGGTTAGGTT
rJMSF015G02+ GTGGCGTCCTTTGCCATGGCGGTTAGGTT
                      ____________________________________________________________
consensus AAGATAATTTCATGTGGGAACACGGTGGCGTCCTTTGCCATGGCGGTTAGGTT
 
. : . : . : . : . : . :
rJMSF017E02+ CCTGACGGGCCCAGCAGTTATGG-CCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMSF021K08+ CCTGACGGGCCCAGCAGTTATGG-CCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMSF015G02+ CCTGACGGGCCCAGCAGTTATGG-CCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMFF009L24+ CCCAGCAGTTATGGCCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
                      ____________________________________________________________
consensus CCTGACGGGCCCAGCAGTTATGG-CCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
 
. : . : . : . : . : . :
rJMSF017E02+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMSF021K08+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMSF015G02+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMFF009L24+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
                      ____________________________________________________________
consensus TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
 
. : . : . : . : . : . :
rJMSF017E02+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMSF021K08+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMSF015G02+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMFF009L24+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
                      ____________________________________________________________
consensus CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
 
. : . : . : . : . : . :
rJMSF017E02+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMSF021K08+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMSF015G02+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMFF009L24+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
                      ____________________________________________________________
consensus TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
 
. : . : . : . : . : . :
rJMSF017E02+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
rJMSF021K08+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
rJMSF015G02+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATT-TGCTGGAGATGGGTCATGTATCA
rJMFF009L24+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
                      ____________________________________________________________
consensus ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
 
. : . : . : . : . : . :
rJMSF017E02+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMSF021K08+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMSF015G02+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMFF009L24+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
                      ____________________________________________________________
consensus ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
 
. : . : . : . : . : . :
rJMSF017E02+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMSF021K08+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMSF015G02+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMFF009L24+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
                      ____________________________________________________________
consensus GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
 
. : . : . : . : . : . :
rJMSF017E02+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMSF021K08+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMSF015G02+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMFF009L24+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
                      ____________________________________________________________
consensus GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
 
. : . : . : . : . : . :
rJMSF017E02+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMSF021K08+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMSF015G02+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMFF009L24+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
                      ____________________________________________________________
consensus GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
 
. : . : . : . : . : . :
rJMSF017E02+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAANGA
rJMSF021K08+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
rJMSF015G02+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
rJMFF009L24+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAA--AGAGCAAAACAAGGAGGCAAAAGA
                      ____________________________________________________________
consensus AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
 
. : . : . : . : . : . :
rJMSF017E02+ CTGATGTACTNTGGGTTATATT
rJMSF021K08+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
rJMSF015G02+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
rJMFF009L24+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
                      ____________________________________________________________
consensus GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
 
. : . : . : . : . : . :
rJMSF021K08+ GGTACGCGTGTAAAGTGTCGA-TTGAACAAAAAAAAATCGTC
rJMSF015G02+ GGTACGCGTGTAAAGTGTCGA-TTGAACAAAAAAAAATCGTC
rJMFF009L24+ GGTACGCGTGTAAAGTGTCGATTTGAACAAAAAAAAATCGTCTATCTAGTTATCGAAAAT
                      ____________________________________________________________
consensus GGTACGCGTGTAAAGTGTCGA-TTGAACAAAAAAAAATCGTCTATCTAGTTATCGAAAAT