Previous Contig 008523:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007P18Sequence565005873 (2)gb:AC105773_17382431e-44Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete s714008523 (2)gb:BT005746_16386743e-51Arabidopsis thaliana clone RAFL15-31-L02 (R50087) unknown protein (At1g31500) mR
JMSF020D06Sequence590005873 (2)gb:AC105773_17382431e-44Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete s789008523 (2)gb:BT005746_16386741e-65Arabidopsis thaliana clone RAFL15-31-L02 (R50087) unknown protein (At1g31500) mR

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020D06+ ANTAAAACGGGATTGNGTCGGTATTATGGCT
                      ____________________________________________________________
consensus ANTAAAACGGGATTGNGTCGGTATTATGGCT
 
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rJMSF020D06+ GCCTTCAAACTCAACGATCCTTCTNGTCATCACATTATTGTTGCAAATACCCATATTTAC
                      ____________________________________________________________
consensus GCCTTCAAACTCAACGATCCTTCTNGTCATCACATTATTGTTGCAAATACCCATATTTAC
 
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rJMSF020D06+ TGGGATCCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
rJMFF007P18+ CCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
                      ____________________________________________________________
consensus TGGGATCCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
 
. : . : . : . : . : . :
rJMSF020D06+ GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
rJMFF007P18+ GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
                      ____________________________________________________________
consensus GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
 
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rJMSF020D06+ GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
rJMFF007P18+ GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
                      ____________________________________________________________
consensus GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
 
. : . : . : . : . : . :
rJMSF020D06+ CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
rJMFF007P18+ CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
                      ____________________________________________________________
consensus CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
 
. : . : . : . : . : . :
rJMSF020D06+ GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
rJMFF007P18+ GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
                      ____________________________________________________________
consensus GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
 
. : . : . : . : . : . :
rJMSF020D06+ GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
rJMFF007P18+ GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
                      ____________________________________________________________
consensus GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
 
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rJMSF020D06+ GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
rJMFF007P18+ GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
                      ____________________________________________________________
consensus GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
 
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rJMSF020D06+ CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
rJMFF007P18+ CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
                      ____________________________________________________________
consensus CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
 
. : . : . : . : . : . :
rJMSF020D06+ TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
rJMFF007P18+ TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
                      ____________________________________________________________
consensus TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
 
. : . : . : . : . : . :
rJMSF020D06+ TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
rJMFF007P18+ TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
                      ____________________________________________________________
consensus TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
 
. : . : . : . : . : . :
rJMSF020D06+ ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
rJMFF007P18+ ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
                      ____________________________________________________________
consensus ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
 
. : . : . : . : . : . :
rJMSF020D06+ GTTTTGTTGCATTTCATGGTTTTCAAAACATTGCTGCA
rJMFF007P18+ GTTTTGTTGTATTTCATGGTTTTCAAAACATTGCTGCAACTGTATTTTCGAAAAAACTGA
                      ____________________________________________________________
consensus GTTTTGTTGTATTTCATGGTTTTCAAAACATTGCTGCAACTGTATTTTCGAAAAAACTGA