Previous Contig 008419:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006D09Sequence582000302 (2)gb:AB098630_15261206e-47Daucus carota DcCysP7 mRNA for cysteine protease, complete cds.748008419 (2)gb:SEN11_17149564e-46Hemerocallis hybrid cultivar cysteine proteinase (SEN11) mRNA, complete cds.
JMFF037A11Sequence573000302 (2)gb:AB098630_15261208e-47Daucus carota DcCysP7 mRNA for cysteine protease, complete cds.706008419 (2)gb:AB098625_15261164e-42Daucus carota DcCysP2 mRNA for cysteine protease, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF006D09+ ATCCGAACAGCAACTCCTCGACTGCAAC
                      ____________________________________________________________
consensus ATCCGAACAGCAACTCCTCGACTGCAAC
 
. : . : . : . : . : . :
rJMFF037A11+ GCTGCAGAGGCGGGTGGATGACCTGGGCCTTCCAATTCATAATGGAC
rJMFF006D09+ CTTAAAAACTACGGCTGCAGAGGCGGGTGGATGACCTGGGCCTTCCAATTCATAATGGAC
                      ____________________________________________________________
consensus CTTAAAAACTACGGCTGCAGAGGCGGGTGGATGACCTGGGCCTTCCAATTCATAATGGAC
 
. : . : . : . : . : . :
rJMFF037A11+ AACGGCGGCCTCGTGATGGACTCAGACTATCCCTACCAGGCTGTTCAGCAAAGTTGCAAC
rJMFF006D09+ AACGGCGGCCTCGTGATGGACTCAGACTATCCCTACCAGGCTGTTCAGCAAAGTTGCAAC
                      ____________________________________________________________
consensus AACGGCGGCCTCGTGATGGACTCAGACTATCCCTACCAGGCTGTTCAGCAAAGTTGCAAC
 
. : . : . : . : . : . :
rJMFF037A11+ GCACAAAACTCCGGCAACTCGGTCGCCACCATTACAGGCTACCAAGAGGTGGCTTCCGGC
rJMFF006D09+ GCACAAAACTCCGGCAACTCGGTCGCCACCATTACAGGCTACCAAGAGGTGGCTTCCGGC
                      ____________________________________________________________
consensus GCACAAAACTCCGGCAACTCGGTCGCCACCATTACAGGCTACCAAGAGGTGGCTTCCGGC
 
. : . : . : . : . : . :
rJMFF037A11+ GAATCTGCTCTCCTCGCCGCCGTTACATACCAGCCTGTCTCAGTGATACTGACCCACGAC
rJMFF006D09+ GAATCTGCTCTCCTCGCCGCCGTTACATACCAGCCTGTCTCAGTGATACTGACCCACGAC
                      ____________________________________________________________
consensus GAATCTGCTCTCCTCGCCGCCGTTACATACCAGCCTGTCTCAGTGATACTGACCCACGAC
 
. : . : . : . : . : . :
rJMFF037A11+ GGAGGAATGTTCCAGTACTACGCCAGCAACAGCGGGATTTTCTCCGGCAACGACGGCGCC
rJMFF006D09+ GGAGGAATGTTCCAGTACTACGCCAGCAACAGCGGGATTTTCTCCGGCAACGACGGCGCC
                      ____________________________________________________________
consensus GGAGGAATGTTCCAGTACTACGCCAGCAACAGCGGGATTTTCTCCGGCAACGACGGCGCC
 
. : . : . : . : . : . :
rJMFF037A11+ GGCGATTGTGGGTCCGGTTTCCGCCATGCTATGACGATCATTGGGTACGGGACGAGCGAT
rJMFF006D09+ GGCGATTGTGGGTCCGGTTTCCGCCATGCTATGACGATCATTGGGTACGGGACGAGCGAT
                      ____________________________________________________________
consensus GGCGATTGTGGGTCCGGTTTCCGCCATGCTATGACGATCATTGGGTACGGGACGAGCGAT
 
. : . : . : . : . : . :
rJMFF037A11+ GACGGGATGGAGTATTGGTTGGCGAAAAATTCATGGGGAACCGGTTGGGGTGAGAATGGT
rJMFF006D09+ GACGGGATGGAGTATTGGTTGGCGAAAAATTCATGGGGAACCGGTTGGGGTGAGAATGGT
                      ____________________________________________________________
consensus GACGGGATGGAGTATTGGTTGGCGAAAAATTCATGGGGAACCGGTTGGGGTGAGAATGGT
 
. : . : . : . : . : . :
rJMFF037A11+ TATATGAGGATGGCCAGAGGGATTAATGCTCGGGGAGTTTGTGGTATTGCCATGGAGGCT
rJMFF006D09+ TATATGAGGATGGCCAGAGGGATTAATGCTCGGGGAGTTTGTGGTATTGCCATGGAGGCT
                      ____________________________________________________________
consensus TATATGAGGATGGCCAGAGGGATTAATGCTCGGGGAGTTTGTGGTATTGCCATGGAGGCT
 
. : . : . : . : . : . :
rJMFF037A11+ TCTTACCCTACCGCTTAAATTTTACTATGTTTTTCGTATATGTTTGTGTGTGTACGCTTT
rJMFF006D09+ TCTTACCCTACCGCTTAAATTTTACTATGTTTTTCGTATATGTTTGTGTGTGTACGCTTT
                      ____________________________________________________________
consensus TCTTACCCTACCGCTTAAATTTTACTATGTTTTTCGTATATGTTTGTGTGTGTACGCTTT
 
. : . : . : . : . : . :
rJMFF037A11+ TTTTGTTTTCTTTGTTTTTGGGTTTTACCAGTTAAATGATGATGTGAAAGTGCCTGAAAG
rJMFF006D09+ TTTTGTTTTCTTTGTTTTTGGGTTTTACCAGTTAAATGATGATGTGAAAGTGCCTGAAAG
                      ____________________________________________________________
consensus TTTTGTTTTCTTTGTTTTTGGGTTTTACCAGTTAAATGATGATGTGAAAGTGCCTGAAAG
 
. : . : . : . : . : . :
rJMFF037A11+ GACGGTTGATTGGGTGTAACATAATTCTGTCATGTAATTTGTTAGTTATTACACATGAGT
rJMFF006D09+ GACGGTTGATTGGGTGTAACATAATTCTGTCATGTAATTTGTTAGTTATTACACATGAGT
                      ____________________________________________________________
consensus GACGGTTGATTGGGTGTAACATAATTCTGTCATGTAATTTGTTAGTTATTACACATGAGT
 
. : . : . : . : . : . :
rJMFF037A11+ AGATAATGTACACCTCCTCTCCACCCAAAATGGTGTGAAAGACATGTAACTTATTACTA
rJMFF006D09+ AGATAATGTACACCTCCTCTCCACCCAAAATGGTGTGAAAGACATGTAACTTATTACTAT
                      ____________________________________________________________
consensus AGATAATGTACACCTCCTCTCCACCCAAAATGGTGTGAAAGACATGTAACTTATTACTAT