clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005N19 | Sequence | 225 | 014147 | 674 | 008402 (3) | pir|T44259|T44259 | 8e-56 | lipoic acid synthase (EC 2.8.1.-) [imported] - Arabidopsis thaliana>gb:AB007987_ | |||
JMFF039L06 | Sequence | 558 | 008402 (3) | pir|T44259|T44259 | 7e-87 | lipoic acid synthase (EC 2.8.1.-) [imported] - Arabidopsis thaliana>gb:AB007987_ | 787 | 021573 | pir|T44259|T44259 | 7e-86 | lipoic acid synthase (EC 2.8.1.-) [imported] - Arabidopsis thaliana>gb:AB007987_ |
JMSF031L15 | Sequence | 616 | 019682 | pir|T44259|T44259 | 5e-52 | lipoic acid synthase (EC 2.8.1.-) [imported] - Arabidopsis thaliana>gb:AB007987_ | 779 | 008402 (3) | pir|T44259|T44259 | 2e-81 | lipoic acid synthase (EC 2.8.1.-) [imported] - Arabidopsis thaliana>gb:AB007987_ |
This contig is upended
. : . : . : . : . : . :
JMFF039L06- TCCACCCCCTCCTGACCCGAATGAA
____________________________________________________________
consensus TCCACCCCCTCCTGACCCGAATGAA
. : . : . : . : . : . :
JMFF039L06- CCATCCAATGTGGCTGAGGCAATTGCTTCATGGGGTTTGGATTATGTTGTGATCACTAGT
____________________________________________________________
consensus CCATCCAATGTGGCTGAGGCAATTGCTTCATGGGGTTTGGATTATGTTGTGATCACTAGT
. : . : . : . : . : . :
JMFF039L06- GTTGACCGTGATGATTTACCCGACCAAGGAAGCGGTCATTTTACAGAGACAGTACAGAAG
rJMSF031L15+ TTTACAGAGACAGTACAGAAG
____________________________________________________________
consensus GTTGACCGTGATGATTTACCCGACCAAGGAAGCGGTCATTTTACAGAGACAGTACAGAAG
. : . : . : . : . : . :
JMFF039L06- CTTAAGGCATTGAAACCAAATATGCTCATAG-AAGCACTGGTTCCGGACTTTAGAGGGGA
rJMSF031L15+ CTTAAGGCATTGAAACCAAATATGCTCATAGNAAGCACTGGTTCCGGACTTTAGAGGGGA
____________________________________________________________
consensus CTTAAGGCATTGAAACCAAATATGCTCATAGNAAGCACTGGTTCCGGACTTTAGAGGGGA
. : . : . : . : . : . :
JMFF039L06- TCCTAGTTGTGTTGAGAAAGTTGCAAAGTCTGGATTAGATGTTTTTGCTCATAATATTGA
rJMSF031L15+ TCCTAGTTGTGTTGAGAAAGTTGCAAAGTCTGGATTAGATGTTTTTGCTCATAATATTGA
____________________________________________________________
consensus TCCTAGTTGTGTTGAGAAAGTTGCAAAGTCTGGATTAGATGTTTTTGCTCATAATATTGA
. : . : . : . : . : . :
JMFF039L06- AACAGTTGAAGAGCTCCAGAGTGTTGTACGAGATCACCGTGCTAACTTTAAGCAGTCCAT
rJMSF031L15+ AACAGTTGAAGAGCTCCAGAGCGTTGTACGAGATCACCGTGCTAACTTTAAGCAGTCCAT
rJMFF005N19+ TTTAAGCAGTCCAT
____________________________________________________________
consensus AACAGTTGAAGAGCTCCAGAGTGTTGTACGAGATCACCGTGCTAACTTTAAGCAGTCCAT
. : . : . : . : . : . :
JMFF039L06- GGATGTCTTAATGATGGCAAAGGACTATGCTCCTGCTGGTACGCTCACCAAGACATCAAT
rJMSF031L15+ GGATGTCTTAATGATGGCAAAGGACTATGCTCCTGCTGGTACGCTCACCAAGACATCAAT
rJMFF005N19+ GGATGTCTTAATAATGGCCAAGGAATATGCACCTACCGGTACACTGACCAAGACATCGAT
____________________________________________________________
consensus GGATGTCTTAATGATGGCAAAGGACTATGCTCCTGCTGGTACGCTCACCAAGACATCAAT
. : . : . : . : . : . :
JMFF039L06- AATGTTGGGCTGTGGAGAAACACCAGACCAAGTTGTTAAAACAATGGAAAAGGTACGAGC
rJMSF031L15+ AATGTTGGGCTGTGGAGAAACACCAGACCAAGTTGTTAAAACAATGGAAAAGGTACGAGC
rJMFF005N19+ AATGTTGGGATGTGGAGAAACGCCCGATCAAGTGATTAAAACAATGGAAAAGGTGAGGGA
____________________________________________________________
consensus AATGTTGGGCTGTGGAGAAACACCAGACCAAGTTGTTAAAACAATGGAAAAGGTACGAGC
. : . : . : . : . : . :
JMFF039L06- AGCAGGTGTTGATGTAATGACGTTTGGTCAGTATATGAGACCCTCAAAGCGCCACATGCC
rJMSF031L15+ AGCAGGTGTTGATGTAATGACGTTTGGTCAGTATATGAGACCCTCAAAGCGCCACATGCC
rJMFF005N19+ AGCGGGTGTTGATGTAATGACATTTGGGCAATACATGAGACCCTCAAAGCGTCACATGCC
____________________________________________________________
consensus AGCAGGTGTTGATGTAATGACGTTTGGTCAGTATATGAGACCCTCAAAGCGCCACATGCC
. : . : . : . : . : . :
JMFF039L06- TGTATCAGAGTACATTACTCCTGAGGCTTTTGAGAAGTATCAAGTCCTTGG
rJMSF031L15+ TGTATCAGAGTACATTACTCCTGAGGCTTTTGAGAAGTATCAAGTCCTTGGGATGCAAAT
rJMFF005N19+ TGTGTCGGAATACATAACTCCAGAAGCTTTTGACAAGTATCGAGTTCTTGGAATGGAAAT
____________________________________________________________
consensus TGTATCAGAGTACATTACTCCTGAGGCTTTTGAGAAGTATCAAGTCCTTGGGATGGAAAT
. : . : . : . : . : . :
rJMSF031L15+ GGGATTTCGATATGTGGCATCTGGTCCCATGGTCAGATCATCATACAAGGCAGGAGAATT
rJMFF005N19+ GGGATTCCGGTATGTGGCATCTGGACCGATGGTTAGGTCCTCGTACAAGGCAGGCGAGTT
____________________________________________________________
consensus GGGATTTCGGTATGTGGCATCTGGTCCGATGGTTAGGTCCTCGTACAAGGCAGGCGAGTT
. : . : . : . : . : . :
rJMSF031L15+ TTACATTAAGTCTATGATTGAATCAGATCGTGCTGCATCTT
rJMFF005N19+ TTACATAAAATCCATGATAGAATCAGACCGCGCTGCATCTTCAGTGTAACATCCGGTTTT
____________________________________________________________
consensus TTACATTAAGTCTATGATTGAATCAGATCGTGCTGCATCTTCAGTGTAACATCCGGTTTT
. : . : . : . : . : . :
rJMFF005N19+ TCATACAATAGAATTTACTGCTTCAGTGGTTTGCTTTATGTGCTCCCCTAATTGCTTGGT
____________________________________________________________
consensus TCATACAATAGAATTTACTGCTTCAGTGGTTTGCTTTATGTGCTCCCCTAATTGCTTGGT
. : . : . : . : . : . :
rJMFF005N19+ CTACTTTTGGTGCAAGCCCCATTCAATCTTCTTCCCATCTCAAGCAAGAATCCACAGCAG
____________________________________________________________
consensus CTACTTTTGGTGCAAGCCCCATTCAATCTTCTTCCCATCTCAAGCAAGAATCCACAGCAG
. : . : . : . : . : . :
rJMFF005N19+ AGTGTGAGGCAATGGGAAAAACATTATTTGTACTTCATGTTACTTGTACATATGATTGTT
____________________________________________________________
consensus AGTGTGAGGCAATGGGAAAAACATTATTTGTACTTCATGTTACTTGTACATATGATTGTT
. : . : . : . : . : . :
rJMFF005N19+ GATGTAATTATAATGTTTTGGATATTGCAATTTGATCATTGTTCAATTGTGTGTAAAGAC
____________________________________________________________
consensus GATGTAATTATAATGTTTTGGATATTGCAATTTGATCATTGTTCAATTGTGTGTAAAGAC
. : . : . : . : . : . :
rJMFF005N19+ CTTCCATTTCATACCTCGAATGTTCAATATGATTGGGAATAACAAAGCACAGTATGATGC
____________________________________________________________
consensus CTTCCATTTCATACCTCGAATGTTCAATATGATTGGGAATAACAAAGCACAGTATGATGC