Previous Contig 008287:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003L08Sequence525000152 (2)gb:AE005172_8902861e-30Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC025417_153951732008287 (2)gb:OSJN00203_16966514e-40Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete seque
JMFF032A03Sequence569000152 (2)gb:AE005172_8902861e-30Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC025417_153951747008287 (2)gb:OSJN00203_16966513e-45Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete seque

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF032A03+ GTGGCATGCG
                      ____________________________________________________________
consensus GTGGCATGCG
 
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rJMFF032A03+ TCATTGGAATTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATCTTATATGCAGTAG
rJMFF003L08+ TATATGCAGTAG
                      ____________________________________________________________
consensus TCATTGGAATTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATCTTATATGCAGTAG
 
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rJMFF032A03+ CAGATCAGGAAGGAGCAA-CAAAGGAAGACATTGAACGACTGCCAAAGTACAAATTCAGA
rJMFF003L08+ CAGATCAGGAAGGAGCAACCAAAGGAAGACATTGAACGACCGCCAAAGTACAAATTCAGA
                      ____________________________________________________________
consensus CAGATCAGGAAGGAGCAACCAAAGGAAGACATTGAACGACTGCCAAAGTACAAATTCAGA
 
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rJMFF032A03+ AGACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAATCCTTTGGAGGAGTAATG
rJMFF003L08+ AGACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAATCCTTTGGAGGAGTAATG
                      ____________________________________________________________
consensus AGACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAATCCTTTGGAGGAGTAATG
 
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rJMFF032A03+ ACTGAATGTGATACTGATTCTCCCATTGAACATGTTCTCCCTCCGGAAGATGCTGAATGT
rJMFF003L08+ ACTGAATGTGATACTGATTCTCCCATTGAACATGTTCTCCCTCCGGAAGATGCTGAATGT
                      ____________________________________________________________
consensus ACTGAATGTGATACTGATTCTCCCATTGAACATGTTCTCCCTCCGGAAGATGCTGAATGT
 
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rJMFF032A03+ TGCATTTGCCTGTGTGCATATGATGATGGCGTGGAATTGCGTGAGCTCCCATGTCGTCAC
rJMFF003L08+ TGCATTTGCCTGTGTGCATATGATGATGGCGTGGAATTGCGTGAGCTCCCATGTCGTCAC
                      ____________________________________________________________
consensus TGCATTTGCCTGTGTGCATATGATGATGGCGTGGAATTGCGTGAGCTCCCATGTCGTCAC
 
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rJMFF032A03+ CGTTTTCACTGTGCCTGCATTGACAAGTGGCTATACATAAATGCCACGTGTCCTC-TTGC
rJMFF003L08+ CGTTTTCACTGTGCCTGCATTGACAAGTGGCTATACATAAATGCCACGTGTCCTCTTTGC
                      ____________________________________________________________
consensus CGTTTTCACTGTGCCTGCATTGACAAGTGGCTATACATAAATGCCACGTGTCCTCTTTGC
 
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rJMFF032A03+ AAGTTCAATATAGTCAAAAATGACAACCAAAGCAATAGTGAAGATGTCTAAGCAAGTAAT
rJMFF003L08+ AAGTTCAATATAGTCAAAAATGACAACCAAAGCAATAGCGAAGATGTCTAAGCAAGTAAT
                      ____________________________________________________________
consensus AAGTTCAATATAGTCAAAAATGACAACCAAAGCAATAGTGAAGATGTCTAAGCAAGTAAT
 
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rJMFF032A03+ TCTTTATGGATCAAGTGATTGGATAGATGTATAGGTACTGGGCATACTGGTGGGGTCTAA
rJMFF003L08+ TCTTTATGGATCAAGTGATTGGATAGATGTATAGGTACTGGGCATACTGGTGGGGTCTAA
                      ____________________________________________________________
consensus TCTTTATGGATCAAGTGATTGGATAGATGTATAGGTACTGGGCATACTGGTGGGGTCTAA
 
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rJMFF032A03+ GTTTCTTGCTCAATCTCCCACTTCACTGCGGCATGATTGCACTACTTGGGTGGTTTTTTC
rJMFF003L08+ GTTTCTTGCTCAATCTCCCACTTCACTGCGGCATGATTGCACTACTTGGGTGGTTTTTTC
                      ____________________________________________________________
consensus GTTTCTTGCTCAATCTCCCACTTCACTGCGGCATGATTGCACTACTTGGGTGGTTTTTTC
 
. : . : . : . : . : . :
rJMFF032A03+ ACGTGTAGTACATAATATGCACATGGAATGTTTAGTTCATGTGAACATCTTTTTCCAATG
rJMFF003L08+ ACGTGTAGTACATAATATGCACATGGAATGTTTAGTTCATGTGAACATCTTTTTCCAATG
                      ____________________________________________________________
consensus ACGTGTAGTACATAATATGCACATGGAATGTTTAGTTCATGTGAACATCTTTTTCCAATG
 
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rJMFF032A03+ CCAAATTGTAGAGTTGTTGCTAATAGAGTTCATACTTGCGAGTGTGTTATGTGTATGGTG
rJMFF003L08+ CCAAATTGTAGAGTTGTTGCTAATAGAGTTCATACTTGCGAGTGTGTTATGTGTATGGTG
                      ____________________________________________________________
consensus CCAAATTGTAGAGTTGTTGCTAATAGAGTTCATACTTGCGAGTGTGTTATGTGTATGGTG
 
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rJMFF032A03+ TTATAGCTGTAACGAGTGCTACTACACAATTAGTGTATGTTGTATGGAACTAACGTAACA
rJMFF003L08+ TTATAGCTGTAACGAGTGCTACTACACAATTAGTGTATGTTGTATGGAACTAACGTAACA
                      ____________________________________________________________
consensus TTATAGCTGTAACGAGTGCTACTACACAATTAGTGTATGTTGTATGGAACTAACGTAACA
 
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rJMFF032A03+ CTTGATACATATATGTACT
rJMFF003L08+ CTTGATACATATATGTACTTGGAATGTTTAGTTCATGTGAACATCTTTNCCAAGCCAAAT
                      ____________________________________________________________
consensus CTTGATACATATATGTACTTGGAATGTTTAGTTCATGTGAACATCTTTNCCAAGCCAAAT