clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF003L08 | Sequence | 525 | 000152 (2) | gb:AE005172_890286 | 1e-30 | Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC025417_153951 | 732 | 008287 (2) | gb:OSJN00203_1696651 | 4e-40 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete seque |
JMFF032A03 | Sequence | 569 | 000152 (2) | gb:AE005172_890286 | 1e-30 | Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC025417_153951 | 747 | 008287 (2) | gb:OSJN00203_1696651 | 3e-45 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete seque |
This contig is upended
. : . : . : . : . : . :
rJMFF032A03+ GTGGCATGCG
____________________________________________________________
consensus GTGGCATGCG
. : . : . : . : . : . :
rJMFF032A03+ TCATTGGAATTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATCTTATATGCAGTAG
rJMFF003L08+ TATATGCAGTAG
____________________________________________________________
consensus TCATTGGAATTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATCTTATATGCAGTAG
. : . : . : . : . : . :
rJMFF032A03+ CAGATCAGGAAGGAGCAA-CAAAGGAAGACATTGAACGACTGCCAAAGTACAAATTCAGA
rJMFF003L08+ CAGATCAGGAAGGAGCAACCAAAGGAAGACATTGAACGACCGCCAAAGTACAAATTCAGA
____________________________________________________________
consensus CAGATCAGGAAGGAGCAACCAAAGGAAGACATTGAACGACTGCCAAAGTACAAATTCAGA
. : . : . : . : . : . :
rJMFF032A03+ AGACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAATCCTTTGGAGGAGTAATG
rJMFF003L08+ AGACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAATCCTTTGGAGGAGTAATG
____________________________________________________________
consensus AGACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAATCCTTTGGAGGAGTAATG
. : . : . : . : . : . :
rJMFF032A03+ ACTGAATGTGATACTGATTCTCCCATTGAACATGTTCTCCCTCCGGAAGATGCTGAATGT
rJMFF003L08+ ACTGAATGTGATACTGATTCTCCCATTGAACATGTTCTCCCTCCGGAAGATGCTGAATGT
____________________________________________________________
consensus ACTGAATGTGATACTGATTCTCCCATTGAACATGTTCTCCCTCCGGAAGATGCTGAATGT
. : . : . : . : . : . :
rJMFF032A03+ TGCATTTGCCTGTGTGCATATGATGATGGCGTGGAATTGCGTGAGCTCCCATGTCGTCAC
rJMFF003L08+ TGCATTTGCCTGTGTGCATATGATGATGGCGTGGAATTGCGTGAGCTCCCATGTCGTCAC
____________________________________________________________
consensus TGCATTTGCCTGTGTGCATATGATGATGGCGTGGAATTGCGTGAGCTCCCATGTCGTCAC
. : . : . : . : . : . :
rJMFF032A03+ CGTTTTCACTGTGCCTGCATTGACAAGTGGCTATACATAAATGCCACGTGTCCTC-TTGC
rJMFF003L08+ CGTTTTCACTGTGCCTGCATTGACAAGTGGCTATACATAAATGCCACGTGTCCTCTTTGC
____________________________________________________________
consensus CGTTTTCACTGTGCCTGCATTGACAAGTGGCTATACATAAATGCCACGTGTCCTCTTTGC
. : . : . : . : . : . :
rJMFF032A03+ AAGTTCAATATAGTCAAAAATGACAACCAAAGCAATAGTGAAGATGTCTAAGCAAGTAAT
rJMFF003L08+ AAGTTCAATATAGTCAAAAATGACAACCAAAGCAATAGCGAAGATGTCTAAGCAAGTAAT
____________________________________________________________
consensus AAGTTCAATATAGTCAAAAATGACAACCAAAGCAATAGTGAAGATGTCTAAGCAAGTAAT
. : . : . : . : . : . :
rJMFF032A03+ TCTTTATGGATCAAGTGATTGGATAGATGTATAGGTACTGGGCATACTGGTGGGGTCTAA
rJMFF003L08+ TCTTTATGGATCAAGTGATTGGATAGATGTATAGGTACTGGGCATACTGGTGGGGTCTAA
____________________________________________________________
consensus TCTTTATGGATCAAGTGATTGGATAGATGTATAGGTACTGGGCATACTGGTGGGGTCTAA
. : . : . : . : . : . :
rJMFF032A03+ GTTTCTTGCTCAATCTCCCACTTCACTGCGGCATGATTGCACTACTTGGGTGGTTTTTTC
rJMFF003L08+ GTTTCTTGCTCAATCTCCCACTTCACTGCGGCATGATTGCACTACTTGGGTGGTTTTTTC
____________________________________________________________
consensus GTTTCTTGCTCAATCTCCCACTTCACTGCGGCATGATTGCACTACTTGGGTGGTTTTTTC
. : . : . : . : . : . :
rJMFF032A03+ ACGTGTAGTACATAATATGCACATGGAATGTTTAGTTCATGTGAACATCTTTTTCCAATG
rJMFF003L08+ ACGTGTAGTACATAATATGCACATGGAATGTTTAGTTCATGTGAACATCTTTTTCCAATG
____________________________________________________________
consensus ACGTGTAGTACATAATATGCACATGGAATGTTTAGTTCATGTGAACATCTTTTTCCAATG
. : . : . : . : . : . :
rJMFF032A03+ CCAAATTGTAGAGTTGTTGCTAATAGAGTTCATACTTGCGAGTGTGTTATGTGTATGGTG
rJMFF003L08+ CCAAATTGTAGAGTTGTTGCTAATAGAGTTCATACTTGCGAGTGTGTTATGTGTATGGTG
____________________________________________________________
consensus CCAAATTGTAGAGTTGTTGCTAATAGAGTTCATACTTGCGAGTGTGTTATGTGTATGGTG
. : . : . : . : . : . :
rJMFF032A03+ TTATAGCTGTAACGAGTGCTACTACACAATTAGTGTATGTTGTATGGAACTAACGTAACA
rJMFF003L08+ TTATAGCTGTAACGAGTGCTACTACACAATTAGTGTATGTTGTATGGAACTAACGTAACA
____________________________________________________________
consensus TTATAGCTGTAACGAGTGCTACTACACAATTAGTGTATGTTGTATGGAACTAACGTAACA
. : . : . : . : . : . :
rJMFF032A03+ CTTGATACATATATGTACT
rJMFF003L08+ CTTGATACATATATGTACTTGGAATGTTTAGTTCATGTGAACATCTTTNCCAAGCCAAAT
____________________________________________________________
consensus CTTGATACATATATGTACTTGGAATGTTTAGTTCATGTGAACATCTTTNCCAAGCCAAAT