Previous Contig 008238:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002L02Sequence723008238 (4)gb:AY058846_15643831e-46Arabidopsis thaliana At1g04870/F13M7_12 mRNA, complete cds.
JMFF040I12Sequence694008238 (4)gb:AY058846_15643831e-48Arabidopsis thaliana At1g04870/F13M7_12 mRNA, complete cds.
JMSF003G20Sequence408007089 (3)gb:AF436837_17998892e-15Arabidopsis thaliana At1g04870/F13M7_12 mRNA, complete cds.811008238 (4)gb:AY058846_15643835e-56Arabidopsis thaliana At1g04870/F13M7_12 mRNA, complete cds.
JMSF036G07Sequence636007089 (3)gb:AF436837_17998891e-76Arabidopsis thaliana At1g04870/F13M7_12 mRNA, complete cds.733008238 (4)gb:AY058846_15643834e-49Arabidopsis thaliana At1g04870/F13M7_12 mRNA, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF003G20+ ATGGATGATNGGCATCCANTTGTGNATGATAC
                      ____________________________________________________________
consensus ATGGATGATNGGCATCCANTTGTGNATGATAC
 
. : . : . : . : . : . :
rJMSF036G07+ GAACAGAA
rJMSF003G20+ TAAAACTCATTATGGTGGTGATATGAATGTTTTAACAAAACCTTATCTGGAAGAACAGAA
                      ____________________________________________________________
consensus TAAAACTCATTATGGTGGTGATATGAATGTTTTAACAAAACCTTATCTGGAAGAACAGAA
 
. : . : . : . : . : . :
rJMSF036G07+ AAAATACTATTTACAGACGTCACTTTGGAGCAACCTTCATCCAAATCAAGTGATAGGATA
rJMFF040I12+ CTATTTACAGACGTCACTTTGGAGCAACCTTCATCCAAATCAAGTGATAGGATA
rJMSF003G20+ AAAATACTATTTACAGACGTCACTTNGGAGCAACCTTCATCCAAATCAAGTGATAGGATA
rJMFF002L02+ CTATTTACAGACGTCACTTTGGAGCAACCTTCATCCAAATCAAGTGATAGGATA
                      ____________________________________________________________
consensus AAAATACTATTTACAGACGTCACTTTGGAGCAACCTTCATCCAAATCAAGTGATAGGATA
 
. : . : . : . : . : . :
rJMSF036G07+ TCCTGCTATCATAAAGGAAATTGATTGCTTGACTTCAACTGTTAATGACTTACTCAATGT
rJMFF040I12+ TCCTGCTATCATAAAGGAAATTGATTGCTTGACTTCAACTGTTAATGACTTACTCAATGT
rJMSF003G20+ TCCTGCTATCATAAAGGAAATTGATTGCTTGACTTCAACTGTTAATGACTTACTCAATGT
rJMFF002L02+ TCCTGCTATCATAAAGGAAATTGATTGCTTGACTTCAACTGTTAATGACTTACTCAATGT
                      ____________________________________________________________
consensus TCCTGCTATCATAAAGGAAATTGATTGCTTGACTTCAACTGTTAATGACTTACTCAATGT
 
. : . : . : . : . : . :
rJMSF036G07+ CCGTGCAAGTGTTTCATCATTGATTACTGCTGAACTCGCAAGGGTTTGTGGGTTTGGTGG
rJMFF040I12+ CCGTGCAAGTGTTTCATCATTGATTACTGCTGAACTCGCAAGGGTTTGTGGGTTTGGTGG
rJMSF003G20+ CCGTGCAAGTGTTTCATCATTGATTACTGCTGAACTCGCAAGGGTTTGTGGGTTTGGTGG
rJMFF002L02+ CCGTGCAAGTGTTTCATCATTGATTACTGCTGAACTCGCAAGGGTTTGTGGGTTTGGTGG
                      ____________________________________________________________
consensus CCGTGCAAGTGTTTCATCATTGATTACTGCTGAACTCGCAAGGGTTTGTGGGTTTGGTGG
 
. : . : . : . : . : . :
rJMSF036G07+ ATGGTTCGATGTCCACTTCAAAGGACGTGAAGACAATCCAGTTAAACTGGAGGTTGAGTT
rJMFF040I12+ ATGGTTCGATGTCCACTTCAAAGGANGTGAAGACAATCCAGTTAAACTGGAGGTTGAGTT
rJMSF003G20+ ATGGTTCGATGTCCACTTCAAAGGACGTGAAGACAATCCAGTTAAACTGGAGGTTGAGTT
rJMFF002L02+ ATGGTTCGATGTCCACTTCAAAGGACGTGAAGACAATCCAGTTAAACTGGAGGTTGAGTT
                      ____________________________________________________________
consensus ATGGTTCGATGTCCACTTCAAAGGACGTGAAGACAATCCAGTTAAACTGGAGGTTGAGTT
 
. : . : . : . : . : . :
rJMSF036G07+ GACAACAGCTCCTAGTGTAGAGTTTGGTACACATTGGGGCCAGCAGGTGTTTCTATTGCA
rJMFF040I12+ GACAACAGCTCCTAGTGTAGAGTTTGGTACACATTGGGGCCAGCAGGTGTTTCTATTGCA
rJMSF003G20+ GACAACAGCTCCTAGTGTAGAGTTTGGTACACATTGGGGCCAGCAGGTGTTTCTATTGCA
rJMFF002L02+ GACAACAGCTCCTAGTGTAGAGTTTGGTACACATTGGGGCCAGCAGGTGTTTCTATTGCA
                      ____________________________________________________________
consensus GACAACAGCTCCTAGTGTAGAGTTTGGTACACATTGGGGCCAGCAGGTGTTTCTATTGCA
 
. : . : . : . : . : . :
rJMSF036G07+ TCCTCCCAAGCGTGTTGGCAAAGGCGATGATGTTAGAATCAACTTTGACATGATCCGCTC
rJMFF040I12+ TCCTCCCAAGCGTGTTGGCAAAGGCGATGATGTTAGAATCAACTTTGACATGATCCGCTC
rJMSF003G20+ TCCTCCCAAGCGTGTTGGCAAAGGCGATGATGTTAGAATCAACTTTGACATGATCCGCTC
rJMFF002L02+ TCCTCCCAAGCGTGTTGGCAAAGGCGATGATGTTAGAATCAACTTTGACATGATCCGCTC
                      ____________________________________________________________
consensus TCCTCCCAAGCGTGTTGGCAAAGGCGATGATGTTAGAATCAACTTTGACATGATCCGCTC
 
. : . : . : . : . : . :
rJMSF036G07+ TAAACAAAACCACCCATTGCTGGAAGTCGAGTTTGATTGTGAGATTAGACACTCTTCTGG
rJMFF040I12+ TAAACAAAACCACCGATTGCTGGAAGTCGAGTTTGATTGTGAGATTAGACACTCTTCTGG
rJMSF003G20+ TAAACAAAACCACCGATTGCTGGAAGTCGAGTTTGATTGTGAGATTAGACACTCTTCTGG
rJMFF002L02+ TAAACAAAACCACCGATTGCTGGAAGTCGAGTTTGATTGTGAGATTAGACACTCTTCTGG
                      ____________________________________________________________
consensus TAAACAAAACCACCGATTGCTGGAAGTCGAGTTTGATTGTGAGATTAGACACTCTTCTGG
 
. : . : . : . : . : . :
rJMSF036G07+ GGATCCAAACCCCTCGTTTAGAAAAAAGTTTTTCATAGAATGAGAAGAACAAAGCTACTA
rJMFF040I12+ GGATCCAAACCCCTCGTTTAGAAAAAAGTTTTTCATAGAATGAGAAGAACAAAGCTACTA
rJMSF003G20+ GGATCCAAACCCCTCGTTTAGAAAAAAGTTTTTCATAGAATGAGAAGAACAAAGCTACTA
rJMFF002L02+ GGATCCAAACCCCTCGTTTAGAAAAAAGTTTTTCATAGAATGAGAAGAACAAAGCTACTA
                      ____________________________________________________________
consensus GGATCCAAACCCCTCGTTTAGAAAAAAGTTTTTCATAGAATGAGAAGAACAAAGCTACTA
 
. : . : . : . : . : . :
rJMSF036G07+ GCATTCAAGTCCCAACAGGTGGAAGAGCTCACAACTTTCTGGTCATCAATGGGTTACTGC
rJMFF040I12+ GCATTCAAGTCCCAACAGGTGGAAGAGCTCACAACTTTCTGGTCATCAATGGGTTACTGC
rJMSF003G20+ GCATTCAAGTCCCAACAGGTGGAAGAGCTCACAACTTTCTGGTCATCAATGGGTTACTGC
rJMFF002L02+ GCATTCAAGTCCCAACAGGTGGAAGAGCTCACAACTTTCTGGTCATCAATGGGTTACTGC
                      ____________________________________________________________
consensus GCATTCAAGTCCCAACAGGTGGAAGAGCTCACAACTTTCTGGTCATCAATGGGTTACTGC
 
. : . : . : . : . : . :
rJMSF036G07+ ATCTTTTGCTTAAGTTTATGCAGTGATTTTTCTGCTTATGACAGAATGGAAATGAGTTCT
rJMFF040I12+ ATCTTTTGCTTAAGTTTATGCAGTGATTTTTCTGCTTATGACAGAATGGAAATGAGTTCT
rJMSF003G20+ ATCTTTTGCTTAAGTTTATGCAGTGATTTTTCTGCTTATGACAGAATGGAAATGAGTTCT
rJMFF002L02+ ATCTTTTGCTTAAGTTTATGCAGTGATTTTTCTGCTTATGACAGAATGGAAATGAGTTCT
                      ____________________________________________________________
consensus ATCTTTTGCTTAAGTTTATGCAGTGATTTTTCTGCTTATGACAGAATGGAAATGAGTTCT
 
. : . : . : . : . : . :
rJMSF036G07+ CTTCATACCTTGAAGGTGTTGTATTCTTAAGTAGAGTGAGAGCGAGAAGAATATTGTGTA
rJMFF040I12+ CTTCATACCTTGAAGGTGTTGTATTCTTAAGTAGAGTGAGAGCGAGAAGAATATTGTGTA
rJMSF003G20+ CTTCATACCTTGAAGGTGTTGTATTCTTAAGTAGAGTGAGAGCGAGAAGAATATTGTGTA
rJMFF002L02+ CTTCATACCTTGAAGGTGTTGTATTCTTAAGTAGAGTGAGAGCGAGAAGAATATTGTGTA
                      ____________________________________________________________
consensus CTTCATACCTTGAAGGTGTTGTATTCTTAAGTAGAGTGAGAGCGAGAAGAATATTGTGTA
 
. : . : . : . : . : . :
rJMSF036G07+ ATGTGGGATAAAAAATTTATTTTATTGTCTTCTGTTAAATTTTGGG-TACTTCGATTTT
rJMFF040I12+ ATGCGGGATAAAAAATTTATTTTATT
rJMSF003G20+ ATGTGGGATAAAAAATTTATTTTATTGTCTTCTGTTAAATTTTGGG-TACTTCGATTTT
rJMFF002L02+ ATGTGGGATAAAAAATTTATTTTATTGTCTTCTGTTAAATTTTGGGTTACTTCGATTTTT
                      ____________________________________________________________
consensus ATGTGGGATAAAAAATTTATTTTATTGTCTTCTGTTAAATTTTGGG-TACTTCGATTTTT