Previous Contig 008215:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D03Sequence574000853 (3)gb:AB026644_15171557e-43Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MFJ20.>gb:AK117357_181745008215 (3)gb:AE005172_8915988e-60Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC000348_153007
JMFF016K13Sequence645000853 (3)gb:AB026644_15171554e-45Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MFJ20.>gb:AK117357_181777008215 (3)gb:AE005172_8915982e-63Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC000348_153007
JMSF007D24Sequence411000853 (3)gb:AB026644_15171552e-19Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MFJ20.>gb:AK117357_181756008215 (3)gb:AE005172_8915987e-64Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC000348_153007

Alignment

This contig is upended


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rJMFF016K13+ GTCAACCGCCAATCCCT
                      ____________________________________________________________
consensus GTCAACCGCCAATCCCT
 
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rJMSF007D24+ CCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
rJMFF016K13+ CCCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
rJMFF002D03+ GATGAGGATTTCGATGCCAGGATAA
                      ____________________________________________________________
consensus CCCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
 
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rJMSF007D24+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
rJMFF016K13+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
rJMFF002D03+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
                      ____________________________________________________________
consensus TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
 
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rJMSF007D24+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
rJMFF016K13+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
rJMFF002D03+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
                      ____________________________________________________________
consensus AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
 
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rJMSF007D24+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
rJMFF016K13+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
rJMFF002D03+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
                      ____________________________________________________________
consensus CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
 
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rJMSF007D24+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
rJMFF016K13+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
rJMFF002D03+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
                      ____________________________________________________________
consensus AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
 
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rJMSF007D24+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
rJMFF016K13+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
rJMFF002D03+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
                      ____________________________________________________________
consensus ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
 
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rJMSF007D24+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
rJMFF016K13+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
rJMFF002D03+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
                      ____________________________________________________________
consensus GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
 
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rJMSF007D24+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
rJMFF016K13+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
rJMFF002D03+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
                      ____________________________________________________________
consensus CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
 
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rJMSF007D24+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
rJMFF016K13+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
rJMFF002D03+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
                      ____________________________________________________________
consensus AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
 
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rJMSF007D24+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
rJMFF016K13+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
rJMFF002D03+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
                      ____________________________________________________________
consensus GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
 
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rJMSF007D24+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
rJMFF016K13+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
rJMFF002D03+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
                      ____________________________________________________________
consensus CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
 
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rJMSF007D24+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
rJMFF016K13+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
rJMFF002D03+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
                      ____________________________________________________________
consensus CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
 
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rJMSF007D24+ CCTTCCTTTTGTCAAGTACTTGTTGGATTAAAAGC
rJMFF016K13+ CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGC
rJMFF002D03+ CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGCAACTGCTGATTATGTTCTATGACAT
                      ____________________________________________________________
consensus CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGCAACTGCTGATTATGTTCTATGACAT