Previous Contig 008117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039A15Sequence422008117 (5)
JMFS061E03Sequence637008117 (5)pir|T51468|T514681e-15hypothetical protein K10A8_120 - Arabidopsis thaliana>gb:ATK10A8_1553515 Arabido
JMSF011E20Sequence288008117 (5)pir|T01285|T012852e-14hypothetical protein At2g19370 [imported] - Arabidopsis thaliana>gb:AC003058_153803011625 (3)pir|T51468|T514681e-84hypothetical protein K10A8_120 - Arabidopsis thaliana>gb:ATK10A8_1553515 Arabido
JMSF039O20Sequence670008117 (5)pir|T51468|T514685e-21hypothetical protein K10A8_120 - Arabidopsis thaliana>gb:ATK10A8_1553515 Arabido813011625 (3)pir|T51468|T514683e-94hypothetical protein K10A8_120 - Arabidopsis thaliana>gb:ATK10A8_1553515 Arabido
JMSF052I20Sequence196008117 (5)647011625 (3)pir|T51468|T514682e-80hypothetical protein K10A8_120 - Arabidopsis thaliana>gb:ATK10A8_1553515 Arabido

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF039O20+ GGCGTGAGC
                      ____________________________________________________________
consensus GGCGTGAGC
 
. : . : . : . : . : . :
JMSF039O20+ AATGCTTTGAGATCAGATTCCTCGAGATAAAAGCTGGATGCTATAGTGTTAGCGTCCGGG
JMFS061E03+ GATAAAAGCTGGATGCTATAGTGTTAGCGTCCGGG
                      ____________________________________________________________
consensus AATGCTTTGAGATCAGATTCCTCGAGATAAAAGCTGGATGCTATAGTGTTAGCGTCCGGG
 
. : . : . : . : . : . :
JMSF039O20+ GGGGTAGTTTCCGGGGAGGATACAAAGGGAACAGATGTTGTCTGCACGGGGAAACCTCGA
JMFS061E03+ GGGGTAGTTTCCGGGGAGGATACAAAGGGAACAGATGTTGTCTGCACGGGGAAACCTCGA
                      ____________________________________________________________
consensus GGGGTAGTTTCCGGGGAGGATACAAAGGGAACAGATGTTGTCTGCACGGGGAAACCTCGA
 
. : . : . : . : . : . :
JMSF039O20+ AGGCGGATCTCACACACACAGGGAGACGAGAATGCATGGCTCCCTGATTTCGTACCATTT
JMFS061E03+ AGGCGGATCTCACACACACAGGGAGACGAGAATGCATGGCTCCCTGATTTCGTACCATTT
                      ____________________________________________________________
consensus AGGCGGATCTCACACACACAGGGAGACGAGAATGCATGGCTCCCTGATTTCGTACCATTT
 
. : . : . : . : . : . :
JMSF039O20+ AAGGCTGTCCCGGGAGTTCTCAATCCCAACGACCCTACTGATAACCTAATGAATGCCTGA
JMFF039A15+ GA
JMFS061E03+ AAGGCTGTCCCGGGAGTTCTCAATCCCAACGACCCTACTGATAACCTAATGAATGCCTGA
                      ____________________________________________________________
consensus AAGGCTGTCCCGGGAGTTCTCAATCCCAACGACCCTACTGATAACCTAATGAATGCCTGA
 
. : . : . : . : . : . :
JMSF039O20+ GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
JMFF039A15+ GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
JMFS061E03+ GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
                      ____________________________________________________________
consensus GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
 
. : . : . : . : . : . :
JMSF039O20+ AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
JMFF039A15+ AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
JMFS061E03+ AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
                      ____________________________________________________________
consensus AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
 
. : . : . : . : . : . :
JMSF039O20+ CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
JMFF039A15+ CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
JMFS061E03+ CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
                      ____________________________________________________________
consensus CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
 
. : . : . : . : . : . :
JMSF039O20+ TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
JMFF039A15+ TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
JMFS061E03+ TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
                      ____________________________________________________________
consensus TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
 
. : . : . : . : . : . :
JMSF039O20+ CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
JMFF039A15+ CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
JMFS061E03+ CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
                      ____________________________________________________________
consensus CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
 
. : . : . : . : . : . :
JMSF039O20+ ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
JMFF039A15+ ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
JMFS061E03+ ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
JMSF011E20+ GGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
                      ____________________________________________________________
consensus ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
 
. : . : . : . : . : . :
JMSF039O20+ AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMFF039A15+ AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMFS061E03+ AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMSF011E20+ AGANTGAAACTTTACCAATAATCATCCANGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMSF052I20+ ATAGGTNTCTCTC
                      ____________________________________________________________
consensus AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
 
. : . : . : . : . : . :
JMSF011E20+ TCTCTCTCTCTTTCTCTCTGTGAATATATATATAGAGAGAGATATATATATATATATATA
JMSF052I20+ TCTCTCTCTCTTTNTCTCTGTGANTATATATATAGAGAGAGANATATATATATATATATA
                      ____________________________________________________________
consensus TCTCTCTCTCTTTCTCTCTGTGAATATATATATAGAGAGAGATATATATATATATATATA
 
. : . : . : . : . : . :
JMSF011E20+ TATAATTGTGTGTGTGTGCGTGCGTGTCAGTAGGGCCAATGTAAATTCTTGAAGAGTGGA
JMSF052I20+ TATAATNGTGTGTGTGTGCGTGCGTGTCAGTAGGGCCAANGTAAATTCTTGAAGAGTGGA
                      ____________________________________________________________
consensus TATAATTGTGTGTGTGTGCGTGCGTGTCAGTAGGGCCAATGTAAATTCTTGAAGAGTGGA
 
. : . : . : . : . : . :
JMSF011E20+ TTATATAGGAGCAAGGATGATTGAAGCAGCTAAACAAAACCCATACCCC
JMSF052I20+ TNATATAGGAGCAAGGATGATTGAAGCAGCTAAACAAAACCCATACCCCAAGAAAATCAT
                      ____________________________________________________________
consensus TTATATAGGAGCAAGGATGATTGAAGCAGCTAAACAAAACCCATACCCCAAGAAAATCAT